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Anzahl der Publikationen: 19
Zeitschriftenartikel
Geistlinger, Ludwig; Csaba, Gergely; Santarelli, Mara; Ramos, Marcel; Schiffer, Lucas; Turaga, Nitesh; Law, Charity; Davis, Sean; Carey, Vincent; Morgan, Martin; Zimmer, Ralf und Waldron, Levi
(2021):
Toward a gold standard for benchmarking gene set enrichment analysis.
In: Briefings in Bioinformatics, Bd. 22, Nr. 1: S. 545-556
Berchtold, Evi; Csaba, Gergely und Zimmer, Ralf
(2019):
YESdb: integrative analysis of environmental stress in yeast.
In: Database-the Journal of Biological Databases and Curation, baz023
Ammar, Constantin; Berchtold, Evi; Csaba, Gergely; Schmidt, Andreas; Imhof, Axel und Zimmer, Ralf
(2019):
Multi-Reference Spectral Library Yields Almost Complete Coverage of Heterogeneous LC-MS/MS Data Sets.
In: Journal of Proteome Research, Bd. 18, Nr. 4: S. 1553-1566
Ammar, Constantin; Gruber, Markus; Csaba, Gergely und Zimmer, Ralf
(2019):
MS-EmpiRe Utilizes Peptide-level Noise Distributions for Ultra-sensitive Detection of Differentially Expressed Proteins.
In: Molecular & Cellular Proteomics, Bd. 18, Nr. 9: S. 1880-1892
Berchtold, Evi; Vetter, Martina; Guendert, Melanie; Csaba, Gergely; Fathke, Christine; Ulbrich, Susanne E.; Thomssen, Christoph; Zimmer, Ralf und Kantelhardt, Eva J.
(2019):
Comparison of six breast cancer classifiers using qPCR.
In: Bioinformatics, Bd. 35, Nr. 18: S. 3412-3420
Sedlar, Karel; Kolek, Jan; Gruber, Markus; Jureckova, Katerina; Branska, Barbora; Csaba, Gergely; Vasylkivska, Maryna; Zimmer, Ralf; Patakova, Petra und Provaznik, Ivo
(2019):
A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock.
In: Biotechnology for Biofuels, Bd. 12, Nr. 1, 243
Muehlhofer, Moritz; Berchtold, Evi; Stratil, Chris G.; Csaba, Gergely; Kunold, Elena; Bach, Nina C.; Sieber, Stephan A.; Haslbeck, Martin; Zimmer, Ralf und Buchner, Johannes
(2019):
The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins.
In: Cell Reports, Bd. 29, Nr. 13
Natarelli, Lucia; Geissler, Claudia; Csaba, Gergely; Wei, Yuanyuan; Zhu, Mengyu; di Francesco, Andrea; Hartmann, Petra; Zimmer, Ralf und Schober, Andreas
(2018):
miR-103 promotes endothelial maladaptation by targeting lncWDR59.
In: Nature Communications, Bd. 9, 2645
[PDF, 4MB]
Natarelli, Lucia; Hartmann, Petra; Wei, Yuanyuan; Geissler, Claudia; Csaba, Gergely; Zimmer, Ralf und Schober, Andreas
(2017):
MIR-103 target LNCWDR59 to affect endothelial proliferation balanced by NOTCH1 and WNT signaling co-activation.
In: Atherosclerosis, Bd. 263, E5-E5
Berchtold, Evi; Csaba, Gergely und Zimmer, Ralf
(2017):
RelExplain-integrating data and networks to explain biological processes.
In: Bioinformatics, Bd. 33, Nr. 12: S. 1837-1844
Schöppner, Patricia; Csaba, Gergely; Braun, Tatjana; Daake, Marina; Richter, Bettina; Lange, Oliver F.; Zacharias, Martin; Zimmer, Ralf und Haslbeck, Martin
(2016):
Regulatory Implications of Non-Trivial Splicing: Isoform 3 of Rab1A Shows Enhanced Basal Activity and Is Not Controlled by Accessory Proteins.
In: Journal of Molecular Biology, Bd. 428, Nr. 8: S. 1544-1557
Viola, Joana R.; Lemnitzer, Patricia; Jansen, Yvonne; Csaba, Gergely; Winter, Carla; Neideck, Carlos; Silvestre-Roig, Carlos; Dittmar, Gunnar; Döring, Yvonne; Drechsler, Maik; Weber, Christian; Zimmer, Ralf; Cenac, Nicolas und Soehnlein, Oliver
(2016):
Resolving Lipid Mediators Maresin 1 and Resolvin D2 Prevent Atheroprogression in Mice.
In: Circulation Research, Bd. 119, Nr. 9: S. 1030-1038
Geistlinger, Ludwig; Csaba, Gergely und Zimmer, Ralf
(2016):
Bioconductor's EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis.
In: BMC Bioinformatics
17:45
[PDF, 1MB]
Berchtold, Evi; Csaba, Gergely und Zimmer, Ralf
(2016):
Evaluating Transcription Factor Activity Changes by Scoring Unexplained Target Genes in Expression Data.
In: PLOS ONE 11(10), e0164513 [PDF, 2MB]
In: PLOS ONE 11(10), e0164513 [PDF, 2MB]
Schreiber, Konrad; Csaba, Gergely; Haslbeck, Martin und Zimmer, Ralf
(2015):
Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae.
In: PLOS ONE 10(10), e0140487 [PDF, 1MB]
In: PLOS ONE 10(10), e0140487 [PDF, 1MB]
Bonfert, Thomas; Kirner, Evelyn; Csaba, Gergely; Zimmer, Ralf und Friedel, Caroline C.
(2015):
ContextMap 2: fast and accurate context-based RNA-seq mapping.
In: BMC Bioinformatics
16:122
[PDF, 1MB]
Bonfert, Thomas; Csaba, Gergely; Zimmer, Ralf und Friedel, Caroline C.
(2012):
A context-based approach to identify the most likely mapping for RNA-seq experiments.
In: BMC Bioinformatics
13:S9
[PDF, 1MB]
Naeem, Haroon; Küffner, Robert; Csaba, Gergely und Zimmer, Ralf
(2010):
miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature.
In: BMC Bioinformatics
11:135
[PDF, 1MB]
Csaba, Gergely; Birzele, Fabian und Zimmer, Ralf
(2009):
Systematic comparison of SCOP and CATH: a new gold standard for protein structure analysis.
In: BMC Structural Biology
9:23
[PDF, 781kB]