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Pöppe, Judith and Sutcliffe, Patricia and Hooper, John N. A. and Wörheide, Gert and Erpenbeck, Dirk (2010): CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida). In: PLoS ONE, Vol. 5, No. 4
Erpenbeck, Dirk and Voigt, Oliver and Wörheide, Gert and Lavrov, Dennis V. (2009): The mitochondrial genomes of sponges provide evidence for multiple invasions by Repetitive Hairpin-forming Elements (RHE). In: BMC Genomics, Vol. 10, No. 1
Schreiber, Fabian and Pik, Kerstin and Erpenbeck, Dirk and Wörheide, Gert and Morgenstern, Burkhard (2009): OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. In: BMC Bioinformatics, Vol. 10
Voigt, Oliver and Erpenbeck, Dirk and Wörheide, Gert (2008): A fragmented metazoan organellar genome. The two mitochondrial chromosomes of Hydra magnipapillata. In: BMC Genomics, Vol. 9
Voigt, Oliver and Erpenbeck, Dirk and Wörheide, Gert (2008): Molecular evolution of rDNA in early diverging Metazoa. First comparative analysis and phylogenetic application of complete SSU rRNA secondary structures in Porifera. In: BMC Evolutionary Biology, Vol. 8