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Veröffentlichungsdatum
Anzahl der Publikationen: 22
2022
Kaeuferle, Theresa; Stief, Tanja A; Canzar, Stefan; Kutlu, Nayad N; Willier, Semjon; Stenger, Dana; Ferrada‐Ernst, Paulina; Habjan, Nicola; Peters, Annika E; Busch, Dirk H und Feuchtinger, Tobias
(23. Januar 2022):
Genome‐wide off‐target analyses of CRISPR/Cas9‐mediated T‐cell receptor engineering in primary human T cells.
In: Clinical & Translational Immunology, Bd. 11, Nr. 1
[PDF, 2MB]
Ito-Kureha, Taku; Leoni, Cristina; Borland, Kayla; Cantini, Giulia; Bataclan, Marian; Metzger, Rebecca N.; Ammann, Gregor; Krug, Anne B.; Marsico, Annalisa; Kaiser, Stefanie; Canzar, Stefan; Feske, Stefan; Monticelli, Silvia; König, Julian und Heissmeyer, Vigo
(2022):
The function of Wtap in N-6-adenosine methylation of mRNAs controls T cell receptor signaling and survival of T cells.
In: Nature Immunology, Bd. 23, Nr. 8: S. 1208-1221
Ringeling, Francisca Rojas; Chakraborty, Shounak; Vissers, Caroline; Reiman, Derek; Patel, Akshay M.; Lee, Ki-Heon; Hong, Ari; Park, Chan-Woo; Reska, Tim; Gagneur, Julien; Chang, Hyeshik; Spletter, Maria L.; Yoon, Ki-Jun; Ming, Guo-li; Song, Hongjun und Canzar, Stefan
(2022):
Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data.
In: Nature Biotechnology, Bd. 40, Nr. 5: S. 741-750
Monteagudo-Mesas, Pablo; Broenner, Cornelia; Kohvaei, Parastou; Amedi, Haris; Canzar, Stefan und Halic, Mario
(2022):
Ccr4-Not complex reduces transcription efficiency in heterochromatin.
In: Nucleic Acids Research, Bd. 50, Nr. 10: S. 5565-5576
Kim, Nam-Shik; Ringeling, Francisca Rojas; Zhou, Ying; Nguyen, Ha Nam; Temme, Stephanie J.; Lin, Yu-Ting; Eacker, Stephen; Dawson, Valina L.; Dawson, Ted M.; Xiao, Bo; Hsu, Kuei-sen; Canzar, Stefan; Li, Weidong; Worley, Paul; Christian, Kimberly M.; Yoon, Ki-Jun; Song, Hongjun und Ming, Guo-li
(2022):
CYFIP1 Dosages Exhibit Divergent Behavioral Impact via Diametric Regulation of NMDA Receptor Complex Translation in Mouse Models of Psychiatric Disorders.
In: Biological Psychiatry, Bd. 92, Nr. 10: S. 815-826
2021
Do, Van Hoan; Ringeling, Francisca Rojas und Canzar, Stefan
(2021):
Linear-time cluster ensembles of large-scale single-cell RNA-seq and multimodal data Van Hoan Do, Francisca Rojas Ringeling, and Stefan Canzar.
In: Genome Research, Bd. 31, Nr. 4: S. 677-688
Do, Van Hoan und Canzar, Stefan
(2021):
A generalization of t-SNE and UMAP to single-cell multimodal omics.
In: Genome Biology, Bd. 22, Nr. 1, 130
Alqassem, Israa; Sonthalia, Yash; Klitzke-Feser, Erika; Shim, Heejung und Canzar, Stefan
(2021):
McSplicer: a probabilistic model for estimating splice site usage from RNA-seq data.
In: Bioinformatics, Bd. 37, Nr. 14: S. 2004-2011
2020
Blaeschke, Franziska; Willier, Semjon; Stenger, Dana; Lepenies, Mareike; Horstmann, Martin A.; Escherich, Gabriele; Zimmermann, Martin; Ringeling, Francisca Rojas; Canzar, Stefan; Kaeuferle, Theresa; Rohlfs, Meino; Binder, Vera; Klein, Christoph und Feuchtinger, Tobias
(2020):
Leukemia-induced dysfunctional TIM-3(+)CD4(+) bone marrow T cells increase risk of relapse in pediatric B-precursor ALL patients.
In: Leukemia, Bd. 34, Nr. 10: S. 2607-2620
Chakraborty, Shounak; Canzar, Stefan; Marschall, Tobias und Schulz, Marcel H.
(2020):
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data.
In: Journal of Computational Biology, Bd. 27, Nr. 3: S. 330-341
Do, Van Hoan; Elbassioni, Khaled und Canzar, Stefan
(2020):
Sphetcher: Spherical Thresholding Improves Sketching of Single-Cell Transcriptomic Heterogeneity.
In: Iscience, Bd. 23, Nr. 6, 101126
Weichmann, Franziska; Hett, Robert; Schepers, Aloys; Ito-Kureha, Taku; Flatley, Andrew; Slama, Kaouthar; Hastert, Florian D.; Angstman, Nicholas B.; Cardoso, M. Cristina; König, Julian; Huettelmaier, Stefan; Dieterich, Christoph; Canzar, Stefan; Helm, Mark; Heissmeyer, Vigo; Feederle, Regina und Meister, Gunter
(2020):
Validation strategies for antibodies targeting modified ribonucleotides.
In: Rna, Bd. 26, Nr. 10: S. 1489-1506
Bamopoulos, Stefanos A.; Batcha, Aarif M. N.; Jurinovic, Vindi; Rothenberg-Thurley, Maja; Janke, Hanna; Ksienzyk, Bianka; Philippou-Massier, Julia; Graf, Alexander; Krebs, Stefan; Blum, Helmut; Schneider, Stephanie; Konstandin, Nikola; Sauerland, Maria Cristina; Görlich, Dennis; Berdel, Wolfgang E.; Woermann, Bernhard J.; Bohlander, Stefan K.; Canzar, Stefan; Mansmann, Ulrich; Hiddemann, Wolfgang; Braess, Jan; Spiekermann, Karsten; Metzeler, Klaus H. und Herold, Tobias
(2020):
Clinical presentation and differential splicing of SRSF2, U2AF1 and SF3B1 mutations in patients with acute myeloid leukemia.
In: Leukemia, Bd. 34, Nr. 10: S. 2621-2634
2019
Berg, Daniel A.; Su, Yijing; Jimenez-Cyrus, Dennisse; Patel, Aneek; Huang, Nancy; Morizet, David; Lee, Stephanie; Shah, Reeti; Ringeling, Francisca Rojas; Jain, Rajan; Epstein, Jonathan A.; Wu, Qing-Feng; Canzar, Stefan; Ming, Guo-Li; Song, Hongjun und Bond, Allison M.
(2019):
A Common Embryonic Origin of Stem Cells Drives Developmental and Adult Neurogenesis.
In: Cell, Bd. 177, Nr. 3
Hoss, Florian; Müller, James L.; Ringeling, Francisca Rojas; Rodriguez-Alcazar, Juan F.; Brinkschulte, Rebecca; Seifert, Gerald; Stahl, Rainer; Broderick, Lori; Putnam, Chris D.; Kolodner, Richard D.; Canzar, Stefan; Geyer, Matthias; Hoffman, Hal M. und Latz, Eicke
(2019):
Alternative splicing regulates stochastic NLRP3 activity.
In: Nature Communications, Bd. 10, 3238
[PDF, 1MB]
Sulakhe, Dinanath; D'Souza, Mark; Wang, Sheng; Balasubramanian, Sandhya; Athri, Prashanth; Xie, Bingqing; Canzar, Stefan; Agam, Gady; Gilliam, T. Conrad und Maltsev, Natalia
(2019):
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.
In: Briefings in Bioinformatics, Bd. 20, Nr. 5: S. 1754-1768
Grabowski, Piotr; Hesse, Sebastian; Hollizeck, Sebastian; Rohlfs, Meino; Behrends, Uta; Sherkat, Roya; Tamary, Hannah; Unal, Ekrem; Somech, Raz; Patiroglu, Turkan; Canzar, Stefan; Ten Bosch, Jutte van der Werff; Klein, Christoph und Rappsilber, Juri
(2019):
Proteome Analysis of Human Neutrophil Granulocytes From Patients With Monogenic Disease Using Data-independent Acquisition.
In: Molecular & Cellular Proteomics, Bd. 18, Nr. 4: S. 760-772
2018
Canzar, Stefan; Elbassioni, Khaled; Elmasry, Amr und Raman, Rajiv
(2018):
On the approximability of the maximum interval constrained coloring problem.
In: Discrete Optimization, Bd. 27: S. 57-72
Gonzales, Natalia M.; Seo, Jungkyun; Cordero, Ana I. Hernandez; St Pierre, Celine L.; Gregory, Jennifer S.; Distler, Margaret G.; Abney, Mark; Canzar, Stefan; Lionikas, Arimantas und Palmer, Abraham A.
(2018):
Genome wide association analysis in a mouse advanced intercross line.
In: Nature Communications, Bd. 9, 5162
[PDF, 1MB]
Chakraborty, Shounak; Canzar, Stefan; Marschall, Tobias und Schulz, Marcel H.
(2018):
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data.
In: Research in Computational Molecular Biology, Recomb 2018, Bd. 10812: S. 21-36
2017
Kuang, Zheng; Böke, Jef D. und Canzar, Stefan
(2017):
The dynamic landscape of fission yeast meiosis alternative-splice isoforms.
In: Genome Research, Bd. 27, Nr. 1: S. 145-156
Yoon, Ki-Jun; Ringeling, Francisca Rojas; Vissers, Caroline; Jacob, Fadi; Pokrass, Michael; Jimenez-Cyrus, Dennisse; Su, Yijing; Kim, Nam-Shik; Zhu, Yunhua; Zheng, Lily; Kim, Sunghan; Wang, Xinyuan; Dore, Louis C.; Jin, Peng; Regot, Sergi; Zhuang, Xiaoxi; Canzar, Stefan; He, Chuan; Ming, Guo-li und Song, Hongjun
(2017):
Temporal Control of Mammalian Cortical Neurogenesis by m(6)A Methylation.
In: Cell, Bd. 171, Nr. 4: S. 877-889