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Anzahl der Publikationen: 23
Zeitschriftenartikel
Oberbeckmann, Elisa; Niebauer, Vanessa; Watanabe, Shinya; Farnung, Lucas; Moldt, Manuela; Schmid, Andrea; Cramer, Patrick; Peterson, Craig L.; Eustermann, Sebastian; Hopfner, Karl-Peter und Korber, Philipp
(2021):
Ruler elements in chromatin remodelers set nucleosome array spacing and phasing.
In: Nature Communications, Bd. 12, Nr. 1, 3232
Gressel, Saskia; Schwalb, Björn; Decker, Tim Michael; Qin, Weihua; Leonhardt, Heinrich; Eick, Dirk und Cramer, Patrick
(2017):
CDK9-dependent RNA polymerase II pausing controls transcription initiation.
In: Elife, Bd. 6, e29736
[PDF, 5MB]
Michel, Margaux; Demel, Carina; Zacher, Benedikt; Schwalb, Björn; Krebs, Stefan; Blum, Helmut; Gagneur, Julien und Cramer, Patrick
(2017):
TT-seq captures enhancer landscapes immediately after T-cell stimulation.
In: Molecular Systems Biology, Bd. 13, Nr. 3, 920
Baejen, Carlo; Andreani, Jessica; Torkler, Phillipp; Battaglia, Sofia; Schwalb, Bjoern; Lidschreiber, Michael; Maier, Kerstin C.; Boltendahl, Andrea; Rus, Petra; Esslinger, Stephanie; Söding, Johannes und Cramer, Patrick
(2017):
Genome-wide Analysis of RNA Polymerase II Termination at Protein-Coding Genes.
In: Molecular Cell, Bd. 66, Nr. 1: S. 38-49
Zacher, Benedikt; Michel, Margaux; Schwalb, Björn; Cramer, Patrick; Tresch, Achim und Gagneur, Julien
(2017):
Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
In: PLOS One 12(1), e0169249 [PDF, 6MB]
In: PLOS One 12(1), e0169249 [PDF, 6MB]
Eser, Philipp; Wachutka, Leonhard; Maier, Kerstin C.; Demel, Carina; Boroni, Mariana; Iyer, Srignanakshi; Cramer, Patrick und Gagneur, Julien
(2016):
Determinants of RNA metabolism in the Schizosaccharomyces pombe genome.
In: Molecular Systems Biology, Bd. 12, Nr. 2, 857
[PDF, 1MB]
Vos, Seychelle M.; Pöllmann, David; Caizzi, Livia; Hofmann, Katharina B.; Rombaut, Pascaline; Zimniak, Tomasz; Herzog, Franz 
ORCID: https://orcid.org/0000-0001-8270-1449 und Cramer, Patrick
(2016):
Architecture and RNA binding of the human negative elongation factor.
In: eLife, Bd. 5, e14981
[PDF, 11MB]
ORCID: https://orcid.org/0000-0001-8270-1449 und Cramer, Patrick
(2016):
Architecture and RNA binding of the human negative elongation factor.
In: eLife, Bd. 5, e14981
[PDF, 11MB]
Bernecky, Carrie; Herzog, Franz; Baumeister, Wolfgang; Plitzko, Jürgen M. und Cramer, Patrick
(2016):
Structure of transcribing mammalian RNA polymerase II.
In: Nature, Bd. 529, Nr. 7587: S. 551-554
Niesser, Jürgen; Wagner, Felix R.; Kostrewa, Dirk; Mühlbacher, Wolfgang und Cramer, Patrick
(2016):
Structure of GPN-Loop GTPase Npa3 and Implications for RNA Polymerase II Assembly.
In: Molecular and Cellular Biology, Bd. 36, Nr. 5: S. 820-831
Eser, Philipp; Wachutka, Leonhard; Maier, Kerstin C.; Demel, Carina; Boroni, Mariana; Iyer, Srignanakshi; Cramer, Patrick und Gagneur, Julien
(2016):
Determinants of RNA metabolism in the Schizosaccharomyces pombe genome.
In: Molecular Systems Biology, Bd. 12, Nr. 2, 857
Schwalb, Björn; Michel, Margaux; Zacher, Benedikt; Frühauf, Katja; Demel, Carina; Tresch, Achim; Gagneur, Julien und Cramer, Patrick
(2016):
TT-seq maps the human transient transcriptome.
In: Science, Bd. 352, Nr. 6290: S. 1225-1228
Schüller, Roland; Forné, Ignasi; Straub, Tobias; Schreieck, Amelie; Texier, Yves; Shah, Nilay; Decker, Tim-Michael; Cramer, Patrick; Imhof, Axel und Eick, Dirk
(2016):
Heptad-Specific Phosphorylation of RNA Polymerase II CTD.
In: Molecular Cell, Bd. 61, Nr. 2: S. 305-314
Vos, Seychelle M.; Pöllmann, David; Caizzi, Livia; Hofmann, Katharina B.; Rombaut, Pascaline; Zimniak, Tomasz; Herzog, Franz und Cramer, Patrick
(2016):
Architecture and RNA binding of the human negative elongation factor.
In: eLife, Bd. 5, e14981
[PDF, 6MB]
Eser, Philipp; Demel, Carina; Maier, Kerstin C.; Schwalb, Björn; Pirkl, Nicole; Martin, Dietmar E.; Cramer, Patrick und Tresch, Achim
(2014):
Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression.
In: Molecular Systems Biology, Bd. 10, Nr. 1
Hirschmann, Wolf D.; Westendorf, Heidrun; Mayer, Andreas; Cannarozzi, Gina; Cramer, Patrick und Jansen, Ralf-Peter
(2014):
Scp160p is required for translational efficiency of codon-optimized mRNAs in yeast.
In: Nucleic Acids Research, Bd. 42, Nr. 6: S. 4043-4055
[PDF, 2MB]
Morozov, Yaroslav I.; Agaronyan, Karen; Cheung, Alan C. M.; Anikin, Michael; Cramer, Patrick und Temiakov, Dmitry
(2014):
A novel intermediate in transcription initiation by human mitochondrial RNA polymerase.
In: Nucleic Acids Research, Bd. 42, Nr. 6: S. 3884-3893
[PDF, 2MB]
Sydow, Jasmin F.; Lipsmeier, Florian; Larraillet, Vincent; Hilger, Maximiliane; Mautz, Björn; Mølhøj,, Michael; Kuentzer, Jan; Klostermann, Stefan; Schoch, Jürgen; Voelger, Hans R.; Regula, Jörg T.; Cramer, Patrick; Papadimitriou, Apollon und Kettenberger, Hubert
(2014):
Structure-Based Prediction of Asparagine and Aspartate Degradation Sites in Antibody Variable Regions.
In: PLOS ONE 9(6), e100736 [PDF, 1MB]
In: PLOS ONE 9(6), e100736 [PDF, 1MB]
Mühlbacher, Wolfgang; Sainsbury, Sarah; Hemann, Matthias; Hantsche, Merle; Neyer, Simon; Herzog, Franz und Cramer, Patrick
(2014):
Conserved architecture of the core RNA polymerase II initiation complex.
In: Nature Communications, Bd. 5, 4310
[PDF, 854kB]
Zacher, Benedikt; Lidschreiber, Michael; Cramer, Patrick; Gagneur, Julien und Tresch, Achim
(2014):
Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle.
In: Molecular Systems Biology, Bd. 10, Nr. 12, 768
[PDF, 2MB]
Niederberger, Theresa; Etzold, Stefanie; Lidschreiber, Michael; Maier, Kerstin C.; Martin, Dietmar E.; Fröhlich, Holger; Cramer, Patrick und Tresch, Achim
(2012):
MC EMiNEM maps the interaction landscape of the Mediator.
In: PLOS Computational Biology 8(6), e1002568 [PDF, 775kB]
In: PLOS Computational Biology 8(6), e1002568 [PDF, 775kB]
Seizl, Martin; Hartmann, Holger; Hoeg, Frederike; Kurth, Fabian; Martin, Dietmar E.; Söding, Johannes und Cramer, Patrick
(September 2011):
A Conserved GA Element in TATA-Less RNA Polymerase II Promoters.
In: PLOS ONE 6(11), e27595 [PDF, 988kB]
In: PLOS ONE 6(11), e27595 [PDF, 988kB]
Müller, Marisa; Heym, Roland Gerhard; Mayer, Andreas; Kramer, Katharina; Schmid, Maria; Cramer, Patrick; Urlaub, Henning; Jansen, Ralf-Peter und Niessing, Dierk
(April 2011):
A cytoplasmic complex mediates specific mRNA recognition and localization in yeast.
In: PLOS Biology 9(4), e1000611 [PDF, 3MB]
In: PLOS Biology 9(4), e1000611 [PDF, 3MB]
Cramer, Patrick
(2010):
Towards molecular systems biology of gene transcription and regulation.
In: Biological Chemistry, Bd. 391, Nr. 7: S. 731-735
[PDF, 292kB]