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Publications by Erpenbeck, Dirk

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Number of items: 34.

Journal article

Galitz, Adrian; Cook, Steve de C.; Ekins, Merrick; Hooper, John N. A.; Naumann, Peter T.; Voogd, Nicole J. de; Abdul Wahab, Muhammad; Wörheide, Gert ORCID: 0000-0002-6380-7421; Erpenbeck, Dirk (2018): Identification of an aquaculture poriferan “Pest with Potential” and its phylogenetic implications. In: PeerJ, Vol. 6, e5586 [PDF, 21MB]

Setiawan, Edwin; Erpenbeck, Dirk; Wörheide, Gert; De Voogd, Nicole J. (2018): Bearing the wrong identity: A case study of an Indo-Pacific common shallow water sponge of the genus Neopetrosia (Haplosclerida;Petrosiidae). In: Zootaxa, Vol. 4500, No. 1: pp. 43-58

Ekins, Merrick; Debitus, Cecile; Erpenbeck, Dirk; Hooper, John N. A. (2018): A new species of the sponge Raspailia (Raspaxilla) (Porifera: Demospongiae: Axinellida: Raspailiidae) from deep seamounts of the Western Pacific. In: Zootaxa, Vol. 4410, No. 2: pp. 379-386

Schuster, Astrid; Vargas, Sergio; Knapp, Ingrid S.; Pomponi, Shirley A.; Toonen, Robert J.; Erpenbeck, Dirk; Wörheide, Gert (2018): Divergence times in demosponges (Porifera): first insights from new mitogenomes and the inclusion of fossils in a birth-death clock model. In: BMC Evolutionary Biology, Vol. 18, 114

Schuster, Astrid; Pisera, Andrzej; Kelly, Michelle; Bell, Lori J.; Pomponi, Shirley A.; Wörheide, Gert; Erpenbeck, Dirk (2018): New species and a molecular dating analysis of Vetulina Schmidt, 1879 (Porifera: Demospongiae: Sphaerocladina) reveal an ancient relict fauna with Tethys origin. In: Zoological Journal of the Linnean Society, Vol. 184, No. 3: pp. 585-604

Ereskovsky, Alexander; Kovtun, Oleg A.; Pronin, Konstantin K.; Apostolov, Apostol; Erpenbeck, Dirk; Ivanenko, Viatcheslav (2018): Sponge community of the western Black Sea shallow water caves: diversity and spatial distribution. In: Peerj, Vol. 6, e4596 [PDF, 14MB]

Schuster, Astrid; Cardenas, Paco; Pisera, Andrzej; Pomponi, Shirley A.; Kelly, Michelle; Wörheide, Gert; Erpenbeck, Dirk (2018): Seven new deep-water Tetractinellida (Porifera: Demospongiae) from the Galapagos Islands - morphological descriptions and DNA barcodes. In: Zoological Journal of the Linnean Society, Vol. 184, No. 2: pp. 273-303

Schuster, Astrid; Lopez, Jose V.; Becking, Leontine E.; Kelly, Michelle; Pomponi, Shirley A.; Wörheide, Gert ORCID: 0000-0002-6380-7421; Erpenbeck, Dirk; Cardenas, Paco (2017): Evolution of group I introns in Porifera: new evidence for intron mobility and implications for DNA barcoding. In: BMC evolutionary biology 17:82 [PDF, 5MB]

Araujo, Rafael; Schneider, Simon; Roe, Kevin J.; Erpenbeck, Dirk; Machordom, Annie (2017): The origin and phylogeny of Margaritiferidae (Bivalvia, Unionoida): a synthesis of molecular and fossil data. In: Zoologica Scripta, Vol. 46, No. 3: pp. 289-307

Boufridi, Asmaa; Lachkar, David; Erpenbeck, Dirk; Beniddir, Mehdi A.; Evanno, Laurent; Petek, Sylvain; Debitus, Cecile; Poupon, Erwan (2017): Ilimaquinone and 5-epi-Ilimaquinone: Beyond a Simple Diastereomeric Ratio, Biosynthetic Considerations from NMR-Based Analysis. In: Australian Journal of Chemistry, Vol. 70, No. 6: pp. 743-750

Voigt, Oliver; Erpenbeck, Dirk; Gonzalez-Pech, Raul A.; Al-Aidaroos, Ali M.; Berumen, Michael L.; Wörheide, Gert ORCID: 0000-0002-6380-7421 (2017): Calcinea of the Red Sea: providing a DNA barcode inventory with description of four new species. In: Marine Biodiversity, Vol. 47, No. 4: pp. 1009-1034

Erpenbeck, Dirk; Aryasari, Ratih; Benning, Sarah; Debitus, Cecile; Kaltenbacher, Emilie; Al-Aidaroos, Ali M.; Schupp, Peter; Hall, Kathryn; Hooper, John N. A.; Voigt, Oliver; Voogd, Nicole J. de; Wörheide, Gert ORCID: 0000-0002-6380-7421 (2017): Diversity of two widespread Indo-Pacific demosponge species revisited. In: Marine Biodiversity, Vol. 47, No. 4: pp. 1035-1043

Chianese, Giuseppina; Silber, Johanna; Luciano, Paolo; Merten, Christian; Erpenbeck, Dirk; Topaloglu, Bülent; Kaiser, Marcel; Tasdemir, Deniz (2017): Antiprotozoal Linear Furanosesterterpenoids from the Marine Sponge Ircinia oros. In: Journal of Natural Products, Vol. 80, No. 9: pp. 2566-2571

Itskovich, Valeria B.; Kaluzhnaya, Oxana V.; Veynberg, Elena; Erpenbeck, Dirk (2017): Endemic Lake Baikal sponges from deep water. 2: Taxonomy and Bathymetric Distribution. In: Zootaxa, Vol. 4236, No. 2: pp. 335-342

Heckeberg, Nicola S.; Erpenbeck, Dirk; Wörheide, Gert ORCID: 0000-0002-6380-7421; Rößner, Gertrud E. (2016): Systematic relationships of five newly sequenced cervid species. In: PeerJ, Vol. 4, e2307 [PDF, 1MB]

Thomas, Torsten; Moitinho-Silva, Lucas; Lurgi, Miguel; Björk, Johannes R.; Easson, Cole; Astudillo-García, Carmen; Olson, Julie B.; Erwin, Patrick M.; López-Legentil, Susanna; Luter, Heidi; Chaves-Fonnegra, Andia; Costa, Rodrigo; Schupp, Peter J.; Steindler, Laura; Erpenbeck, Dirk; Gilbert, Jack; Knight, Rob; Ackermann, Gail; Lopez, Jose Victor; Taylor, Michael W.; Thacker, Robert W.; Montoya, Jose M.; Hentschel, Ute; Webster, Nicole S. (2016): Diversity, structure and convergent evolution of the global sponge microbiome. In: Nature Communications, Vol. 7, 11870 [PDF, 1MB]

Erpenbeck, Dirk; Ekins, Merrick; Enghuber, Nicole; Hooper, John N. A.; Lehnert, Helmut; Poliseno, Angelo; Schuster, Astrid; Setiawan, Edwin; Voogd, Nicole J. de; Wörheide, Gert ORCID: 0000-0002-6380-7421; Soest, Rob W. M. van (2016): Nothing in (sponge) biology makes sense - except when based on holotypes. In: Journal of the Marine Biological Association of the United Kingdom, Vol. 96, No. 2: pp. 305-311 [PDF, 312kB]

Ekins, Merrick; Erpenbeck, Dirk; Wörheide, Gert ORCID: 0000-0002-6380-7421; Hooper, John N. A. (2016): Staying well connected - Lithistid sponges on seamounts. In: Journal of the Marine Biological Association of the United Kingdom, Vol. 96, No. 2: pp. 437-451 [PDF, 661kB]

Setiawan, Edwin; Voogd, Nicole J. de; Swierts, Thomas; Hooper, John N. A.; Wörheide, Gert ORCID: 0000-0002-6380-7421; Erpenbeck, Dirk (2016): MtDNA diversity of the Indonesian giant barrel sponge Xestospongia testudinaria (Porifera: Haplosclerida) - implications from partial cytochrome oxidase 1 sequences. In: Journal of the Marine Biological Association of the United Kingdom, Vol. 96, No. 2: pp. 323-332 [PDF, 478kB]

Setiawan, Edwin; Voogd, Nicole J. de; Hooper, John N. A.; Wörheide, Gert ORCID: 0000-0002-6380-7421; Erpenbeck, Dirk (2016): The lysidyl aminoacyl transfer RNA synthetase intron, a new marker for demosponge phylogeographics - case study on Neopetrosia. In: Journal of the Marine Biological Association of the United Kingdom, Vol. 96, No. 2: pp. 333-339 [PDF, 347kB]

Setiawan, Edwin; Voogd, Nicole J. de; Hooper, John N. A.; Wörheide, Gert ORCID: 0000-0002-6380-7421; Erpenbeck, Dirk (2016): Bottomless barrel-sponge species in the Indo-Pacific? In: Zootaxa, Vol. 4136, No. 2: pp. 393-396

Ekins, Merrick; Erpenbeck, Dirk; Wörheide, Gert ORCID: 0000-0002-6380-7421; Hooper, John N. A. (2016): A new species of lithistid sponge hiding within the Isabella mirabilis species complex (Porifera: Demospongiae: Tetractinellida) from seamounts of the Norfolk Ridge. In: Zootaxa, Vol. 4136, No. 3: pp. 433-460

Erpenbeck, Dirk; Voigt, Oliver; Al-Aidaroos, Ali M.; Berumen, Michael L.; Büttner, Gabriele; Catania, Daniela; Guirguis, Adel Naguib; Paulay, Gustav; Schätzle, Simone; Wörheide, Gert ORCID: 0000-0002-6380-7421 (2016): Molecular biodiversity of Red Sea demosponges. In: Marine Pollution Bulletin, Vol. 105, No. 2: pp. 507-514

Schuster, Astrid; Erpenbeck, Dirk; Pisera, Andrzej; Hooper, John; Bryce, Monika; Fromont, Jane; Wörheide, Gert ORCID: 0000-0002-6380-7421 (2015): Deceptive Desmas: Molecular Phylogenetics Suggests a New Classification and Uncovers Convergent Evolution of Lithistid Demosponges.
In: PLOS ONE 10(1), e116038 [PDF, 7MB]

Gierl, Christoph; Reichenbacher, Bettina; Gaudant, Jean; Erpenbeck, Dirk; Pharisat, André (2013): An extraordinary gobioid fish fossil from southern france.
In: PLOS ONE 8(5), e64117 [PDF, 4MB]

Van Soest, Rob W. M.; Boury-Esnault, Nicole; Vacelet, Jean; Dohrmann, Martin; Erpenbeck, Dirk; De Voogd, Nicole J.; Santodomingo, Nadiezhda; Vanhoorne, Bart; Kelly, Michelle; Hooper, John N. A. (2012): Global diversity of sponges (Porifera).
In: PLOS ONE 7(4), e35105 [PDF, 9MB]

Pöppe, Judith; Sutcliffe, Patricia; Hooper, John N. A.; Wörheide, Gert ORCID: 0000-0002-6380-7421; Erpenbeck, Dirk (1. April 2010): CO I Barcoding Reveals New Clades and Radiation Patterns of Indo-Pacific Sponges of the Family Irciniidae (Demospongiae: Dictyoceratida).
In: PLOS ONE 5(4) [PDF, 1MB]

Erpenbeck, Dirk; Voigt, Oliver; Wörheide, Gert ORCID: 0000-0002-6380-7421; Lavrov, Dennis V. (2009): The mitochondrial genomes of sponges provide evidence for multiple invasions by Repetitive Hairpin-forming Elements (RHE). In: BMC Genomics 10:591 [PDF, 675kB]

Schreiber, Fabian; Pik, Kerstin; Erpenbeck, Dirk; Wörheide, Gert ORCID: 0000-0002-6380-7421; Morgenstern, Burkhard (2009): OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. In: BMC Bioinformatics, Vol. 10 [PDF, 907kB]

Schreiber, Fabian; Pick, Kerstin; Erpenbeck, Dirk; Wörheide, Gert ORCID: 0000-0002-6380-7421; Morgenstern, Burkhard (2009): OrthoSelect: a protocol for selecting orthologous groups in phylogenomics. In: BMC Bioinformatics 10:219 [PDF, 907kB]

Cummins, Scott F.; Erpenbeck, Dirk; Zou, Zhihua; Claudianos, Charles; Moroz, Leonid L.; Nagle, Gregg T.; Degnan, Bernard M. (2009): Candidate chemoreceptor subfamilies differentially expressed in the chemosensory organs of the mollusc Aplysia. In: BMC Biology 7:28 [PDF, 9MB]

Voigt, Oliver; Erpenbeck, Dirk; Wörheide, Gert ORCID: 0000-0002-6380-7421 (2008): A fragmented metazoan organellar genome. The two mitochondrial chromosomes of Hydra magnipapillata. In: BMC Genomics, Vol. 9 [PDF, 533kB]

Voigt, Oliver; Erpenbeck, Dirk; Wörheide, Gert ORCID: 0000-0002-6380-7421 (2008): Molecular evolution of rDNA in early diverging Metazoa. First comparative analysis and phylogenetic application of complete SSU rRNA secondary structures in Porifera. In: BMC Evolutionary Biology, Vol. 8 [PDF, 2MB]

Conference or Workshop Item

Rößner, Gertrud E.; Bärmann, Eva V.; Heckeberg, Nicola S.; Asher, Robert J.; Erpenbeck, Dirk; Wörheide, Gert ORCID: 0000-0002-6380-7421 (2013): On the phylogenetic position of the hornless pecoran Amphimoschus – an example of arising challenges with the incorporation of fossils in extant combined frameworks. International Conference on Ruminant Phylogenetics Munich 2013, 03. - 06. September 2013, München, Deutschland. [PDF, 904kB]

This list was generated on Fri Sep 20 07:19:29 2019 CEST.