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Dokumententyp
| Veröffentlichungsdatum
Anzahl der Publikationen: 13
Zeitschriftenartikel
Luo, Jie; Molbay, Muge; Chen, Ying; Horvath, Izabela 
ORCID: https://orcid.org/0000-0002-1702-2869; Kadletz, Karoline; Kick, Benjamin; Zhao, Shan; Al-Maskari, Rami; Singh, Inderjeet; Ali, Mayar; Bhatia, Harsharan Singh; Minde, David-Paul; Negwer, Moritz; Hoeher, Luciano; Calandra, Gian Marco; Groschup, Bernhard; Su, Jinpeng; Kimna, Ceren ORCID: https://orcid.org/0000-0003-2283-4295; Rong, Zhouyi ORCID: https://orcid.org/0000-0003-4849-1278; Galensowske, Nikolas; Todorov, Mihail Ivilinov ORCID: https://orcid.org/0000-0002-8627-1260; Jeridi, Denise; Ohn, Tzu-Lun; Roth, Stefan ORCID: https://orcid.org/0000-0001-6823-2981; Simats, Alba; Singh, Vikramjeet ORCID: https://orcid.org/0000-0002-7361-8317; Khalin, Igor ORCID: https://orcid.org/0000-0003-1041-5747; Pan, Chenchen; Arús, Bernardo A. ORCID: https://orcid.org/0000-0001-6132-7793; Bruns, Oliver T.; Zeidler, Reinhard ORCID: https://orcid.org/0000-0002-3357-4954; Liesz, Arthur ORCID: https://orcid.org/0000-0002-9069-2594; Protzer, Ulrike ORCID: https://orcid.org/0000-0002-9421-1911; Plesnila, Nikolaus ORCID: https://orcid.org/0000-0001-8832-228X; Ussar, Siegfried ORCID: https://orcid.org/0000-0001-7575-0920; Hellal, Farida; Paetzold, Johannes; Elsner, Markus ORCID: https://orcid.org/0000-0001-7227-5212; Dietz, Hendrik ORCID: https://orcid.org/0000-0003-1270-3662 und Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100
(2025):
Nanocarrier imaging at single-cell resolution across entire mouse bodies with deep learning.
In: Nature Biotechnology [Forthcoming]
ORCID: https://orcid.org/0000-0002-1702-2869; Kadletz, Karoline; Kick, Benjamin; Zhao, Shan; Al-Maskari, Rami; Singh, Inderjeet; Ali, Mayar; Bhatia, Harsharan Singh; Minde, David-Paul; Negwer, Moritz; Hoeher, Luciano; Calandra, Gian Marco; Groschup, Bernhard; Su, Jinpeng; Kimna, Ceren ORCID: https://orcid.org/0000-0003-2283-4295; Rong, Zhouyi ORCID: https://orcid.org/0000-0003-4849-1278; Galensowske, Nikolas; Todorov, Mihail Ivilinov ORCID: https://orcid.org/0000-0002-8627-1260; Jeridi, Denise; Ohn, Tzu-Lun; Roth, Stefan ORCID: https://orcid.org/0000-0001-6823-2981; Simats, Alba; Singh, Vikramjeet ORCID: https://orcid.org/0000-0002-7361-8317; Khalin, Igor ORCID: https://orcid.org/0000-0003-1041-5747; Pan, Chenchen; Arús, Bernardo A. ORCID: https://orcid.org/0000-0001-6132-7793; Bruns, Oliver T.; Zeidler, Reinhard ORCID: https://orcid.org/0000-0002-3357-4954; Liesz, Arthur ORCID: https://orcid.org/0000-0002-9069-2594; Protzer, Ulrike ORCID: https://orcid.org/0000-0002-9421-1911; Plesnila, Nikolaus ORCID: https://orcid.org/0000-0001-8832-228X; Ussar, Siegfried ORCID: https://orcid.org/0000-0001-7575-0920; Hellal, Farida; Paetzold, Johannes; Elsner, Markus ORCID: https://orcid.org/0000-0001-7227-5212; Dietz, Hendrik ORCID: https://orcid.org/0000-0003-1270-3662 und Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100
(2025):
Nanocarrier imaging at single-cell resolution across entire mouse bodies with deep learning.
In: Nature Biotechnology [Forthcoming]
Kaltenecker, Doris; Al-Maskari, Rami; Negwer, Moritz; Hoeher, Luciano; Kofler, Florian; Zhao, Shan; Todorov, Mihail ORCID: https://orcid.org/0000-0002-8627-1260; Rong, Zhouyi; Paetzold, Johannes Christian; Wiestler, Benedikt ORCID: https://orcid.org/0000-0002-2963-7772; Piraud, Marie ORCID: https://orcid.org/0000-0002-4917-2458; Rueckert, Daniel ORCID: https://orcid.org/0000-0002-5683-5889; Geppert, Julia; Morigny, Pauline; Rohm, Maria ORCID: https://orcid.org/0000-0003-3926-1534; Menze, Bjoern H.; Herzig, Stephan ORCID: https://orcid.org/0000-0003-3950-3652; Berriel Diaz, Mauricio ORCID: https://orcid.org/0000-0003-4670-919X und Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100
(2024):
Virtual reality-empowered deep-learning analysis of brain cells.
In: Nature Methods [Forthcoming]
[PDF, 7MB]
ORCID: https://orcid.org/0000-0002-8627-1260; Rong, Zhouyi; Paetzold, Johannes Christian; Wiestler, Benedikt ORCID: https://orcid.org/0000-0002-2963-7772; Piraud, Marie ORCID: https://orcid.org/0000-0002-4917-2458; Rueckert, Daniel ORCID: https://orcid.org/0000-0002-5683-5889; Geppert, Julia; Morigny, Pauline; Rohm, Maria ORCID: https://orcid.org/0000-0003-3926-1534; Menze, Bjoern H.; Herzig, Stephan ORCID: https://orcid.org/0000-0003-3950-3652; Berriel Diaz, Mauricio ORCID: https://orcid.org/0000-0003-4670-919X und Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100
(2024):
Virtual reality-empowered deep-learning analysis of brain cells.
In: Nature Methods [Forthcoming]
[PDF, 7MB]
Rong, Zhouyi; Mai, Hongcheng; Ebert, Gregor; Kapoor, Saketh; Puelles, Victor G.; Czogalla, Jan; Hu, Senbin; Su, Jinpeng; Prtvar, Danilo; Singh, Inderjeet; Schädler, Julia; Delbridge, Claire; Steinke, Hanno; Frenzel, Hannah; Schmidt, Katja; Braun, Christian; Bruch, Gina ORCID: https://orcid.org/0000-0002-2848-5084; Ruf, Viktoria; Ali, Mayar; Sühs, Kurt-Wolfram; Nemati, Mojtaba; Hopfner, Franziska; Ulukaya, Selin; Jeridi, Denise; Mistretta, Daniele; Caliskan, Özüm Sehnaz; Wettengel, Jochen Martin; Cherif, Fatma; Kolabas, Zeynep Ilgin; Molbay, Müge; Horvath, Izabela; Zhao, Shan; Krahmer, Natalie; Yildirim, Ali Önder; Ussar, Siegfried; Herms, Jochen; Huber, Tobias B.; Tahirovic, Sabina; Schwarzmaier, Susanne M.; Plesnila, Nikolaus ORCID: https://orcid.org/0000-0001-8832-228X; Höglinger, Günter U. ORCID: https://orcid.org/0000-0001-7587-6187; Ondruschka, Benjamin; Bechmann, Ingo; Protzer, Ulrike; Elsner, Markus; Bhatia, Harsharan Singh; Hellal, Farida und Ertürk, Ali
(2024):
Persistence of spike protein at the skull-meninges-brain axis may contribute to the neurological sequelae of COVID-19.
In: Cell Host & Microbe, Bd. 32, Nr. 12: S. 2112-2130
[PDF, 15MB]
ORCID: https://orcid.org/0000-0002-2848-5084; Ruf, Viktoria; Ali, Mayar; Sühs, Kurt-Wolfram; Nemati, Mojtaba; Hopfner, Franziska; Ulukaya, Selin; Jeridi, Denise; Mistretta, Daniele; Caliskan, Özüm Sehnaz; Wettengel, Jochen Martin; Cherif, Fatma; Kolabas, Zeynep Ilgin; Molbay, Müge; Horvath, Izabela; Zhao, Shan; Krahmer, Natalie; Yildirim, Ali Önder; Ussar, Siegfried; Herms, Jochen; Huber, Tobias B.; Tahirovic, Sabina; Schwarzmaier, Susanne M.; Plesnila, Nikolaus ORCID: https://orcid.org/0000-0001-8832-228X; Höglinger, Günter U. ORCID: https://orcid.org/0000-0001-7587-6187; Ondruschka, Benjamin; Bechmann, Ingo; Protzer, Ulrike; Elsner, Markus; Bhatia, Harsharan Singh; Hellal, Farida und Ertürk, Ali
(2024):
Persistence of spike protein at the skull-meninges-brain axis may contribute to the neurological sequelae of COVID-19.
In: Cell Host & Microbe, Bd. 32, Nr. 12: S. 2112-2130
[PDF, 15MB]
Kuemmerle, Louis B. ORCID: https://orcid.org/0000-0002-9193-1243; Luecken, Malte D. ORCID: https://orcid.org/0000-0001-7464-7921; Firsova, Alexandra B.; Andrade e Sousa, Lisa Barros de; Straßer, Lena; Mekki, Ilhem Isra; Campi, Francesco; Heumos, Lukas; Shulman, Maiia ORCID: https://orcid.org/0009-0006-6308-1997; Beliaeva, Valentina; Hediyeh-Zadeh, Soroor ORCID: https://orcid.org/0000-0001-7513-6779; Schaar, Anna C.; Mahbubani, Krishnaa T. ORCID: https://orcid.org/0000-0002-1327-2334; Sountoulidis, Alexandros ORCID: https://orcid.org/0000-0002-8837-4642; Balassa, Tamás; Kovacs, Ferenc ORCID: https://orcid.org/0000-0003-4512-4448; Horvath, Peter; Piraud, Marie ORCID: https://orcid.org/0000-0002-4917-2458; Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100; Samakovlis, Christos und Theis, Fabian J. ORCID: https://orcid.org/0000-0002-2419-1943
(2024):
Probe set selection for targeted spatial transcriptomics.
In: Nature Methods, Bd. 21, Nr. 12: S. 2260-2270
[PDF, 16MB]
ORCID: https://orcid.org/0000-0002-9193-1243; Luecken, Malte D. ORCID: https://orcid.org/0000-0001-7464-7921; Firsova, Alexandra B.; Andrade e Sousa, Lisa Barros de; Straßer, Lena; Mekki, Ilhem Isra; Campi, Francesco; Heumos, Lukas; Shulman, Maiia ORCID: https://orcid.org/0009-0006-6308-1997; Beliaeva, Valentina; Hediyeh-Zadeh, Soroor ORCID: https://orcid.org/0000-0001-7513-6779; Schaar, Anna C.; Mahbubani, Krishnaa T. ORCID: https://orcid.org/0000-0002-1327-2334; Sountoulidis, Alexandros ORCID: https://orcid.org/0000-0002-8837-4642; Balassa, Tamás; Kovacs, Ferenc ORCID: https://orcid.org/0000-0003-4512-4448; Horvath, Peter; Piraud, Marie ORCID: https://orcid.org/0000-0002-4917-2458; Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100; Samakovlis, Christos und Theis, Fabian J. ORCID: https://orcid.org/0000-0002-2419-1943
(2024):
Probe set selection for targeted spatial transcriptomics.
In: Nature Methods, Bd. 21, Nr. 12: S. 2260-2270
[PDF, 16MB]
Empl, Laura; Chovsepian, Alexandra; Chahin, Maryam; Kan, Wing Yin Vanessa; Fourneau, Julie; Van Steenbergen, Valérie; Weidinger, Sanofer; Marcantoni, Maite; Ghanem, Alexander; Bradley, Peter; Conzelmann, Karl Klaus; Cai, Ruiyao; Ghasemigharagoz, Alireza; Ertürk, Ali; Wagner, Ingrid; Kreutzfeldt, Mario; Merkler, Doron; Liebscher, Sabine und Bareyre, Florence M.
(12. Mai 2022):
Selective plasticity of callosal neurons in the adult contralesional cortex following murine traumatic brain injury.
In: Nature Communications, Bd. 13
[PDF, 6MB]
Gruber, Tim; Pan, Chenchen; Contreras, Raian E.; Wiedemann, Tobias; Morgan, Donald A.; Skowronski, Alicja A.; Lefort, Sandrine; Murat, Cahue De Bernardis; Le Thuc, Ophelia; Legutko, Beata; Ruiz-Ojeda, Francisco J.; Fuente-Fernandez, Maria de la; Garcia-Villalon, Angel Luis; Gonzalez-Hedström, Daniel; Huber, Melanie; Szigeti-Buck, Klara; Müller, Timo D.; Ussar, Siegfried; Pfluger, Paul; Woods, Steve C.; Ertürk, Ali; LeDuc, Charles A.; Rahmouni, Kamal; Granado, Miriam; Horvath, Tamas L.; Tschöp, Matthias H. und Garcia-Caceres, Cristina
(2021):
Obesity-associated hyperleptinemia alters the gliovascular interface of the hypothalamus to promote hypertension.
In: Cell Metabolism, Bd. 33, Nr. 6: S. 1155-1170
[PDF, 5MB]
Schoppe, Oliver; Pan, Chenchen; Coronel, Javier; Mai, Hongcheng; Rong, Zhouyi; Todorov, Mihail Ivilinov; Müskes, Annemarie; Navarro, Fernando; Li, Hongwei; Ertürk, Ali und Menze, Björn H.
(2020):
Deep learning-enabled multi-organ segmentation in whole-body mouse scans.
In: Nature Communications, Bd. 11, Nr. 1, 5626
[PDF, 2MB]
Todorov, Mihail Ivilinov; Paetzold, Johannes Christian; Schoppe, Oliver; Tetteh, Giles; Shit, Suprosanna; Efremov, Velizar; Todorov-Völgyi, Katalin; Duering, Marco; Dichgans, Martin ORCID: https://orcid.org/0000-0002-0654-387X; Piraud, Marie; Menze, Björn und Ertürk, Ali
(2020):
Machine learning analysis of whole mouse brain vasculature.
In: Nature Methods, Bd. 17, Nr. 4: S. 442-449
[PDF, 3MB]
ORCID: https://orcid.org/0000-0002-0654-387X; Piraud, Marie; Menze, Björn und Ertürk, Ali
(2020):
Machine learning analysis of whole mouse brain vasculature.
In: Nature Methods, Bd. 17, Nr. 4: S. 442-449
[PDF, 3MB]
Llovera, Gemma; Benakis, Corinne; Enzmann, Gaby; Cai, Ruiyao; Arzberger, Thomas; Ghasemigharagoz, Alireza; Mao, Xiang; Malik, Rainer; Lazarevic, Ivana; Liebscher, Sabine; Ertürk, Ali; Meissner, Lilja; Vivien, Denis; Haffner, Christof; Plesnila, Nikolaus; Montaner, Joan; Engelhardt, Britta und Liesz, Arthur
(2017):
The choroid plexus is a key cerebral invasion route for T cells after stroke.
In: Acta Neuropathologica, Bd. 134, Nr. 6: S. 851-868
Garvalov, Boyan K. und Ertürk, Ali
(2017):
Cancer Diagnostics: Seeing whole-tumour heterogeneity.
In: Nature Biomedical Engineering, Bd. 1, Nr. 10: S. 772-774
Ertürk, Ali; Mentz, Susanne; Stout, Erik E.; Hedehus, Maj; Dominguez, Sara L.; Neumaier, Lisa; Krammer, Franziska; Llovera, Gemma; Srinivasan, Karpagam; Hansen, David V.; Liesz, Arthur; Scearce-Levie, Kimberly A. und Sheng, Morgan
(2016):
Interfering with the Chronic Immune Response Rescues Chronic Degeneration After Traumatic Brain Injury.
In: Journal of Neuroscience, Bd. 36, Nr. 38: S. 9962-9975
Buchbeitrag
Sun, Ting; Li, Yuanfang; Förstera, Benjamin; Stanic, Karen; Lu, Shu; Steffens, Sabine; Yin, Changjun; Ertürk, Ali; Megens, Remco T. A.; Weber, Christian ORCID: https://orcid.org/0000-0003-4610-8714; Habenicht, Andreas und Mohanta, Sarajo K.
(2022):
Tissue Clearing Approaches in Atherosclerosis.
In:
Atherosclerosis. Methods and protocols. Methods in Molecular Biology, Bd. 2419. New York: Humana Press. S. 747-763
ORCID: https://orcid.org/0000-0003-4610-8714; Habenicht, Andreas und Mohanta, Sarajo K.
(2022):
Tissue Clearing Approaches in Atherosclerosis.
In:
Atherosclerosis. Methods and protocols. Methods in Molecular Biology, Bd. 2419. New York: Humana Press. S. 747-763
Konferenzbeitrag
Horvath, Izabela; Paetzold, Johannes; Schoppe, Oliver; Al-Maskari, Rami; Ezhov, Ivan; Shit, Suprosanna; Li, Hongwei; Ertürk, Ali und Menze, Bjoern
(2022):
METGAN: Generative Tumour Inpainting and Modality Synthesis in Light Sheet Microscopy.
2022 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV), Waikoloa, Hawaii; Online, 2022.01.04-08.
Mortensen, Eric (Hrsg.):
In: 2022 IEEE Winter Conference on Applications of Computer Vision : 4-8 January 2022, Waikoloa, Hawaii : proceedings,
Piscataway, NJ: IEEE. S. 3230-3240