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Anzahl der Publikationen: 9
Zeitschriftenartikel
Deng, Zhi-Luo; Dhingra, Akshay; Fritz, Adrian; Goetting, Jasper; Muench, Philipp C.; Steinbrueck, Lars; Schulz, Thomas F.; Ganzenmueller, Tina und McHardy, Alice C.
(2021):
Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses.
In: Briefings in Bioinformatics, Bd. 22, Nr. 3, bbaa123
Muench, Philipp C.; Franzosa, Eric A.; Stecher, Baerbel; McHardy, Alice C. und Huttenhower, Curtis
(2021):
Identification of Natural CRISPR Systems and Targets in the Human Microbiome.
In: Cell Host & Microbe, Bd. 29, Nr. 1: S. 94-106
Spriewald, Stefanie; Stadler, Eva; Hense, Burkhard A.; Muench, Philipp C.; McHardy, Alice C.; Weiss, Anna S.; Obeng, Nancy; Müller, Johannes und Stecher, Barbel
(2020):
Evolutionary Stabilization of Cooperative Toxin Production through a Bacterium-Plasmid-Phage Interplay.
In: Mbio, Bd. 11, Nr. 4, e00912-20
Asgari, Ehsaneddin; Muench, Philipp C.; Lesker, Till R.; McHardy, Alice C. und Mofrad, Mohammad R. K.
(2019):
DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection.
In: Bioinformatics, Bd. 35, Nr. 14: S. 2498-2500
Vatanen, Tommi; Plichta, Damian R.; Somani, Juhi; Muench, Philipp C.; Arthur, Timothy D.; Hall, Andrew Brantley; Rudolf, Sabine; Oakeley, Edward J.; Ke, Xiaobo; Young, Rachel A.; Haiser, Henry J.; Kolde, Raivo; Yassour, Moran; Luopajarvi, Kristiina; Siljander, Heli; Virtanen, Suvi M.; Ilonen, Jorma; Uibo, Raivo; Tillmann, Vallo; Mokurov, Sergei; Dorshakova, Natalya; Porter, Jeffrey A.; McHardy, Alice C.; Lahdesmaki, Harri; Vlamakis, Hera; Huttenhower, Curtis; Knip, Mikael und Xavier, Ramnik J.
(2019):
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life.
In: Nature Microbiology, Bd. 4, Nr. 3: S. 470-479
Münch, Philipp C.; Stecher, Bärbel und McHardy, Alice C.
(2017):
EDEN: evolutionary dynamics within environments.
In: Bioinformatics, Bd. 33, Nr. 20: S. 3292-3295
Krause, Susanne; Bremges, Andreas; Münch, Philipp C.; McHardy, Alice C. und Gescher, Johannes
(2017):
Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms.
In: Scientific Reports, Bd. 7, 3289
[PDF, 8MB]
Brugiroux, Sandrine; Beutler, Markus; Pfann, Carina; Garzetti, Debora; Ruscheweyh, Hans-Joachim; Ring, Diana; Diehl, Manuel; Herp, Simone; Lötscher, Yvonne; Hussain, Saib; Bunk, Boyke; Pukall, Rüdiger; Huson, Daniel H.; Münch, Philipp C.; McHardy, Alice C.; McCoy, Kathy D.; Macpherson, Andrew J.; Loy, Alexander; Clavel, Thomas; Berry, David und Stecher, Bärbel
(2017):
Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium.
In: Nature Microbiology, Bd. 2, Nr. 2, 16215
Hacquard, Stephane; Kracher, Barbara; Hiruma, Kei; Münch, Philipp C.; Garrido-Oter, Ruben; Thon, Michael R.; Weimann, Aaron; Damm, Ulrike; Dallery, Jean-Felix; Hainaut, Matthieu; Henrissat, Bernard; Lespinet, Olivier; Sacristán, Soledad; Themaat, Emiel Ver Loren van; Kemen, Eric; McHardy, Alice C.; Schulze-Lefert, Paul und O'Connell, Richard J.
(2016):
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi.
In: Nature Communications, Bd. 7, 11362
[PDF, 2MB]