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Veröffentlichungsdatum
Anzahl der Publikationen: 8
2024
Mai, Hongcheng; Luo, Jie; Hoeher, Luciano; Al-Maskari, Rami; Horvath, Izabela; Chen, Ying; Kofler, Florian; Piraud, Marie; Paetzold, Johannes C. C.; Modamio, Jennifer; Todorov, Mihail; Elsner, Markus; Hellal, Farida und Ertuerk, Ali
(2024):
Whole-body cellular mapping in mouse using standard IgG antibodies.
In: Nature Biotechnology, Bd. 42, Nr. 4
[PDF, 14MB]
Kaltenecker, Doris; Al-Maskari, Rami; Negwer, Moritz; Hoeher, Luciano; Kofler, Florian; Zhao, Shan; Todorov, Mihail 
ORCID: https://orcid.org/0000-0002-8627-1260; Rong, Zhouyi; Paetzold, Johannes Christian; Wiestler, Benedikt ORCID: https://orcid.org/0000-0002-2963-7772; Piraud, Marie ORCID: https://orcid.org/0000-0002-4917-2458; Rueckert, Daniel ORCID: https://orcid.org/0000-0002-5683-5889; Geppert, Julia; Morigny, Pauline; Rohm, Maria ORCID: https://orcid.org/0000-0003-3926-1534; Menze, Bjoern H.; Herzig, Stephan ORCID: https://orcid.org/0000-0003-3950-3652; Berriel Diaz, Mauricio ORCID: https://orcid.org/0000-0003-4670-919X und Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100
(2024):
Virtual reality-empowered deep-learning analysis of brain cells.
In: Nature Methods [Forthcoming]
[PDF, 7MB]
ORCID: https://orcid.org/0000-0002-8627-1260; Rong, Zhouyi; Paetzold, Johannes Christian; Wiestler, Benedikt ORCID: https://orcid.org/0000-0002-2963-7772; Piraud, Marie ORCID: https://orcid.org/0000-0002-4917-2458; Rueckert, Daniel ORCID: https://orcid.org/0000-0002-5683-5889; Geppert, Julia; Morigny, Pauline; Rohm, Maria ORCID: https://orcid.org/0000-0003-3926-1534; Menze, Bjoern H.; Herzig, Stephan ORCID: https://orcid.org/0000-0003-3950-3652; Berriel Diaz, Mauricio ORCID: https://orcid.org/0000-0003-4670-919X und Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100
(2024):
Virtual reality-empowered deep-learning analysis of brain cells.
In: Nature Methods [Forthcoming]
[PDF, 7MB]
Kuemmerle, Louis B. ORCID: https://orcid.org/0000-0002-9193-1243; Luecken, Malte D. ORCID: https://orcid.org/0000-0001-7464-7921; Firsova, Alexandra B.; Andrade e Sousa, Lisa Barros de; Straßer, Lena; Mekki, Ilhem Isra; Campi, Francesco; Heumos, Lukas; Shulman, Maiia ORCID: https://orcid.org/0009-0006-6308-1997; Beliaeva, Valentina; Hediyeh-Zadeh, Soroor ORCID: https://orcid.org/0000-0001-7513-6779; Schaar, Anna C.; Mahbubani, Krishnaa T. ORCID: https://orcid.org/0000-0002-1327-2334; Sountoulidis, Alexandros ORCID: https://orcid.org/0000-0002-8837-4642; Balassa, Tamás; Kovacs, Ferenc ORCID: https://orcid.org/0000-0003-4512-4448; Horvath, Peter; Piraud, Marie ORCID: https://orcid.org/0000-0002-4917-2458; Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100; Samakovlis, Christos und Theis, Fabian J. ORCID: https://orcid.org/0000-0002-2419-1943
(2024):
Probe set selection for targeted spatial transcriptomics.
In: Nature Methods, Bd. 21, Nr. 12: S. 2260-2270
[PDF, 16MB]
ORCID: https://orcid.org/0000-0002-9193-1243; Luecken, Malte D. ORCID: https://orcid.org/0000-0001-7464-7921; Firsova, Alexandra B.; Andrade e Sousa, Lisa Barros de; Straßer, Lena; Mekki, Ilhem Isra; Campi, Francesco; Heumos, Lukas; Shulman, Maiia ORCID: https://orcid.org/0009-0006-6308-1997; Beliaeva, Valentina; Hediyeh-Zadeh, Soroor ORCID: https://orcid.org/0000-0001-7513-6779; Schaar, Anna C.; Mahbubani, Krishnaa T. ORCID: https://orcid.org/0000-0002-1327-2334; Sountoulidis, Alexandros ORCID: https://orcid.org/0000-0002-8837-4642; Balassa, Tamás; Kovacs, Ferenc ORCID: https://orcid.org/0000-0003-4512-4448; Horvath, Peter; Piraud, Marie ORCID: https://orcid.org/0000-0002-4917-2458; Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100; Samakovlis, Christos und Theis, Fabian J. ORCID: https://orcid.org/0000-0002-2419-1943
(2024):
Probe set selection for targeted spatial transcriptomics.
In: Nature Methods, Bd. 21, Nr. 12: S. 2260-2270
[PDF, 16MB]
2023
Kofler, Florian; Shit, Suprosanna; Ezhov, Ivan; Fidon, Lucas; Horvath, Izabela; Al-Maskari, Rami; Li, Hongwei Bran; Bhatia, Harsharan Singh; Loehr, Timo; Piraud, Marie; Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100; Kirschke, Jan; Peeken, Jan C.; Vercauteren, Tom; Zimmer, Claus; Wiestler, Benedikt und Menze, Bjoern
(2023):
blob loss: Instance Imbalance Aware Loss Functions for Semantic Segmentation.
28th International Conference on Information Processing in Medical Imaging (IPMI), San Carlos De Bariloche, Argentina, 18. - 23. Juni 2023.
Frangi, Alejandro; Bruijne, Marleen de; Wassermann, Demian und Navab, Nassir (Hrsg.):
In: Information Processing in Medical Imaging, Lecture Notes in Computer Science
Bd. 13939
Cham: Springer. S. 755-767
ORCID: https://orcid.org/0000-0001-5163-5100; Kirschke, Jan; Peeken, Jan C.; Vercauteren, Tom; Zimmer, Claus; Wiestler, Benedikt und Menze, Bjoern
(2023):
blob loss: Instance Imbalance Aware Loss Functions for Semantic Segmentation.
28th International Conference on Information Processing in Medical Imaging (IPMI), San Carlos De Bariloche, Argentina, 18. - 23. Juni 2023.
Frangi, Alejandro; Bruijne, Marleen de; Wassermann, Demian und Navab, Nassir (Hrsg.):
In: Information Processing in Medical Imaging, Lecture Notes in Computer Science
Bd. 13939
Cham: Springer. S. 755-767
Kofler, Florian; Wahle, Johannes; Ezhov, Ivan; Wagner, Sophia J.; Al-Maskari, Rami; Gryska, Emilia; Todorov, Mihail ORCID: https://orcid.org/0000-0002-8627-1260; Bukas, Christina; Meissen, Felix; Peng, Tingying; Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100; Rueckert, Daniel; Heckemann, Rolf; Kirschke, Jan; Zimmer, Claus; Wiestler, Benedikt; Menze, Bjoern und Piraud, Marie
(2023):
Approaching Peak Ground Truth.
20th IEEE International Symposium on Biomedical Imaging (ISBI), Cartagena, Colombia, 11. - 16. September 2022.
Institute of Electrical and Electronics Engineers (Hrsg.),
In: 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI),
Piscataway: IEEE.
ORCID: https://orcid.org/0000-0002-8627-1260; Bukas, Christina; Meissen, Felix; Peng, Tingying; Ertürk, Ali ORCID: https://orcid.org/0000-0001-5163-5100; Rueckert, Daniel; Heckemann, Rolf; Kirschke, Jan; Zimmer, Claus; Wiestler, Benedikt; Menze, Bjoern und Piraud, Marie
(2023):
Approaching Peak Ground Truth.
20th IEEE International Symposium on Biomedical Imaging (ISBI), Cartagena, Colombia, 11. - 16. September 2022.
Institute of Electrical and Electronics Engineers (Hrsg.),
In: 2023 IEEE 20th International Symposium on Biomedical Imaging (ISBI),
Piscataway: IEEE.
2022
Bilic, Patrick; Christ, Patrick; Li, Hongwei Bran; Vorontsov, Eugene; Ben-Cohen, Avi; Kaissis, Georgios; Szeskin, Adi; Jacobs, Colin; Mamani, Gabriel Efrain Humpire; Chartrand, Gabriel; Lohoefer, Fabian; Holch, Julian Walter; Sommer, Wieland; Hofmann, Felix; Hostettler, Alexandre; Lev-Cohain, Naama; Drozdzal, Michal; Amitai, Michal Marianne; Vivanti, Refael; Sosna, Jacob; Ezhov, Ivan; Sekuboyina, Anjany; Navarro, Fernando; Kofler, Florian; Paetzold, Johannes C.; Shit, Suprosanna; Hu, Xiaobin; Lipkova, Jana; Rempfler, Markus; Piraud, Marie; Kirschke, Jan; Wiestler, Benedikt; Zhang, Zhiheng; Huelsemeyer, Christian; Beetz, Marcel; Ettlinger, Florian; Antonelli, Michela; Bae, Woong; Bellver, Miriam; Bi, Lei; Chen, Hao; Chlebus, Grzegorz; Dam, Erik B.; Dou, Qi; Fu, Chi-Wing; Georgescu, Bogdan; Giro-I-Nieto, Xavier; Gruen, Felix; Han, Xu; Heng, Pheng-Ann; Hesser, Jürgen; Moltz, Jan Hendrik; Igel, Christian; Isensee, Fabian; Jaeger, Paul; Jia, Fucang; Kaluva, Krishna Chaitanya; Khened, Mahendra; Kim, Ildoo; Kim, Jae-Hun; Kim, Sungwoong; Kohl, Simon; Konopczynski, Tomasz; Kori, Avinash; Krishnamurthi, Ganapathy; Li, Fan; Li, Hongchao; Li, Junbo; Li, Xiaomeng; Lowengrub, John; Ma, Jun; Maier-Hein, Klaus; Maninis, Kevis-Kokitsi; Meine, Hans; Merhof, Dorit; Pai, Akshay; Perslev, Mathias; Petersen, Jens; Pont-Tuset, Jordi; Qi, Jin; Qi, Xiaojuan; Rippel, Oliver; Roth, Karsten; Sarasua, Ignacio; Schenk, Andrea; Shen, Zengming; Torres, Jordi; Wachinger, Christian; Wang, Chunliang; Weninger, Leon; Wu, Jianrong; Xu, Daguang; Yang, Xiaoping; Yu, Simon Chun-Ho; Yuan, Yading; Yue, Miao; Zhang, Liping; Cardoso, Jorge; Bakas, Spyridon; Braren, Rickmer; Heinemann, Volker; Pal, Christopher; Tang, An; Kadoury, Samuel; Soler, Luc; Ginneken, Bram van; Greenspan, Hayit; Joskowicz, Leo und Menze, Bjoern
(2022):
The Liver Tumor Segmentation Benchmark (LiTS).
In: Medical Image Analysis, Bd. 84, 102680
2020
Todorov, Mihail Ivilinov; Paetzold, Johannes Christian; Schoppe, Oliver; Tetteh, Giles; Shit, Suprosanna; Efremov, Velizar; Todorov-Völgyi, Katalin; Duering, Marco; Dichgans, Martin ORCID: https://orcid.org/0000-0002-0654-387X; Piraud, Marie; Menze, Björn und Ertürk, Ali
(2020):
Machine learning analysis of whole mouse brain vasculature.
In: Nature Methods, Bd. 17, Nr. 4: S. 442-449
[PDF, 3MB]
ORCID: https://orcid.org/0000-0002-0654-387X; Piraud, Marie; Menze, Björn und Ertürk, Ali
(2020):
Machine learning analysis of whole mouse brain vasculature.
In: Nature Methods, Bd. 17, Nr. 4: S. 442-449
[PDF, 3MB]
2017
Petrescu, Alexandru; Piraud, Marie; Roux, Guillaume; McCulloch, I. P. und Le Hur, Karyn
(2017):
Precursor of the Laughlin state of hard-core bosons on a two-leg ladder.
In: Physical Review B, Bd. 96, Nr. 1, 14524