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Anzahl der Publikationen: 21
Zeitschriftenartikel
Failmezger, Henrik; Dursun, Ezgi; Duemcke, Sebastian; Endele, Max; Poron, Don; Schröder, Timm; Krug, Anne und Tresch, Achim
(2019):
Clustering of samples with a tree-shaped dependence structure, with an application to microscopic time lapse imaging.
In: Bioinformatics, Bd. 35, Nr. 13: S. 2291-2299
Stricker, Georg; Engelhardt, Alexander; Schulz, Daniel; Schmid, Matthias; Tresch, Achim und Gagneur, Julien
(2017):
GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis.
In: Bioinformatics, Bd. 33, Nr. 15: S. 2258-2265
Zacher, Benedikt; Michel, Margaux; Schwalb, Björn; Cramer, Patrick; Tresch, Achim und Gagneur, Julien
(2017):
Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
In: PLOS One 12(1), e0169249 [PDF, 6MB]
In: PLOS One 12(1), e0169249 [PDF, 6MB]
Schwalb, Björn; Michel, Margaux; Zacher, Benedikt; Frühauf, Katja; Demel, Carina; Tresch, Achim; Gagneur, Julien und Cramer, Patrick
(2016):
TT-seq maps the human transient transcriptome.
In: Science, Bd. 352, Nr. 6290: S. 1225-1228
Engelhardt, Alexander; Rieger, Anna; Tresch, Achim und Mansmann, Ulrich
(2016):
Efficient Maximum Likelihood Estimation for Pedigree Data with the Sum-Product Algorithm.
In: Human Heredity, Bd. 82: S. 1-15
[PDF, 292kB]
Glas, Julia; Dümcke, Sebastian; Zacher, Benedikt; Poron, Don; Gagneur, Julien und Tresch, Achim
(2016):
Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model.
In: Nucleic Acids Research, Bd. 44, Nr. 5, e44
[PDF, 3MB]
Dursun, Ezgi; Endele, Max; Musumeci, Andrea; Failmezger, Henrik; Wang, Shu-Hung; Tresch, Achim; Schroeder, Timm und Krug, Anne B.
(2016):
Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors.
In: Scientific Reports, Bd. 6, 37462
[PDF, 1MB]
Zacher, Benedikt; Lidschreiber, Michael; Cramer, Patrick; Gagneur, Julien und Tresch, Achim
(2014):
Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle.
In: Molecular Systems Biology, Bd. 10, Nr. 12, 768
[PDF, 2MB]
Eser, Philipp; Demel, Carina; Maier, Kerstin C.; Schwalb, Björn; Pirkl, Nicole; Martin, Dietmar E.; Cramer, Patrick und Tresch, Achim
(2014):
Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression.
In: Molecular Systems Biology, Bd. 10, Nr. 1
da Costa, Olivia Prazeres; Hoffman, Arthur; Rey, Johannes W.; Mansmann, Ulrich; Buch, Thorsten und Tresch, Achim
(2014):
Selection of Higher Order Regression Models in the Analysis of Multi-Factorial Transcription Data.
In: PLOS ONE 9(3), e91840 [PDF, 723kB]
In: PLOS ONE 9(3), e91840 [PDF, 723kB]
Dümcke, Sebastian; Mansmann, Ulrich und Tresch, Achim
(2014):
A Novel Test for Independence Derived from an Exact Distribution of ith Nearest Neighbours.
In: PLOS ONE 9(10), e107955 [PDF, 1MB]
In: PLOS ONE 9(10), e107955 [PDF, 1MB]
Norousi, Ramin; Wickles, Stephan; Leidig, Christoph; Tresch, Achim; Schmid, Volker J. 
ORCID: https://orcid.org/0000-0003-2195-8130; Beckmann, Roland und Becker, Thomas
(2013):
Automatic post-picking improves particle image detection from Cryo-EM micrographs.
In: Journal of Structural Biology, Bd. 182, Nr. 2: S. 59-66
ORCID: https://orcid.org/0000-0003-2195-8130; Beckmann, Roland und Becker, Thomas
(2013):
Automatic post-picking improves particle image detection from Cryo-EM micrographs.
In: Journal of Structural Biology, Bd. 182, Nr. 2: S. 59-66
Norousi, Ramin; Wickles, Stephan; Leidig, Christoph; Becker, Thomas; Schmid, Volker J. ORCID: https://orcid.org/0000-0003-2195-8130; Beckmann, Roland und Tresch, Achim
(2013):
Automatic post-picking using MAPPOS improves particle image detection from cryo-EM micrographs.
In: Journal of Structural Biology, Bd. 182, Nr. 2: S. 59-66
ORCID: https://orcid.org/0000-0003-2195-8130; Beckmann, Roland und Tresch, Achim
(2013):
Automatic post-picking using MAPPOS improves particle image detection from cryo-EM micrographs.
In: Journal of Structural Biology, Bd. 182, Nr. 2: S. 59-66
Failmezger, Henrik; Froehlich, Holger und Tresch, Achim
(2013):
Unsupervised automated high throughput phenotyping of RNAi time-lapse movies.
In: BMC Bioinformatics
14:292
[PDF, 2MB]
Niederberger, Theresa; Etzold, Stefanie; Lidschreiber, Michael; Maier, Kerstin C.; Martin, Dietmar E.; Fröhlich, Holger; Cramer, Patrick und Tresch, Achim
(2012):
MC EMiNEM maps the interaction landscape of the Mediator.
In: PLOS Computational Biology 8(6), e1002568 [PDF, 775kB]
In: PLOS Computational Biology 8(6), e1002568 [PDF, 775kB]
Schmidt, Christine S.; Bultmann, Sebastian; Meilinger, Daniela; Zacher, Benedikt; Tresch, Achim; Maier, Kerstin C.; Peter, Christian; Martin, Dietmar E.; Leonhardt, Heinrich und Spada, Fabio
(2012):
Global DNA hypomethylation prevents consolidation of differentiation programs and allows reversion to the embryonic stem cell state.
In: PLOS ONE 7(12), e52629 [PDF, 1MB]
In: PLOS ONE 7(12), e52629 [PDF, 1MB]
Krupp, Markus; Maass, Thorsten; Marquardt, Jens U.; Staib, Frank; Bauer, Tobias; Koenig, Rainer; Biesterfeld, Stefan; Galle, Peter R.; Tresch, Achim und Teufel, Andreas
(2011):
The functional cancer map: A systems-level synopsis of genetic deregulation in cancer.
In: BMC Medical Genomics
4:53
[PDF, 2MB]
Gagneur, Julien; Elze, Markus C. und Tresch, Achim
(2011):
Selective Phenotyping, Entropy Reduction, and the Mastermind game.
In: BMC Bioinformatics
12:406
[PDF, 465kB]
Zacher, Benedikt; Kuan, Pei Fen und Tresch, Achim
(2010):
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data.
In: BMC Bioinformatics
11:194
[PDF, 1MB]
Buness, Andreas; Ruschhaupt, Markus; Kuner, Ruprecht und Tresch, Achim
(2009):
Classification across gene expression microarray studies.
In: BMC Bioinformatics
10:453
[PDF, 363kB]
Paper
Engelhardt, Alexander; Rieger, Anna; Tresch, Achim und Mansmann, Ulrich
(19. Dezember 2016):
Efficient Maximum Likelihood Estimation for Pedigree Data with the Sum-Product Algorithm.
Department of Statistics: Technical Reports, Nr. 200
[PDF, 541kB]