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Publications by Tresch, Achim

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Number of items: 20.

Journal article

Zacher, Benedikt; Michel, Margaux; Schwalb, Björn; Cramer, Patrick; Tresch, Achim; Gagneur, Julien (2017): Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
In: PLOS One 12(1), e0169249 [PDF, 6MB]

Stricker, Georg; Engelhardt, Alexander; Schulz, Daniel; Schmid, Matthias; Tresch, Achim; Gagneur, Julien (2017): GenoGAM: genome-wide generalized additive models for ChIP-Seq analysis. In: Bioinformatics, Vol. 33, No. 15: pp. 2258-2265

Dursun, Ezgi; Endele, Max; Musumeci, Andrea; Failmezger, Henrik; Wang, Shu-Hung; Tresch, Achim; Schroeder, Timm; Krug, Anne B. (2016): Continuous single cell imaging reveals sequential steps of plasmacytoid dendritic cell development from common dendritic cell progenitors. In: Scientific Reports, Vol. 6, 37462 [PDF, 1MB]

Glas, Julia; Dümcke, Sebastian; Zacher, Benedikt; Poron, Don; Gagneur, Julien; Tresch, Achim (2016): Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model. In: Nucleic Acids Research, Vol. 44, No. 5, e44 [PDF, 3MB]

Engelhardt, Alexander; Rieger, Anna; Tresch, Achim; Mansmann, Ulrich (2016): Efficient Maximum Likelihood Estimation for Pedigree Data with the Sum-Product Algorithm. In: Human Heredity, Vol. 82: pp. 1-15 [PDF, 292kB]

Schwalb, Björn; Michel, Margaux; Zacher, Benedikt; Frühauf, Katja; Demel, Carina; Tresch, Achim; Gagneur, Julien; Cramer, Patrick (2016): TT-seq maps the human transient transcriptome. In: Science, Vol. 352, No. 6290: pp. 1225-1228

Zacher, Benedikt; Lidschreiber, Michael; Cramer, Patrick; Gagneur, Julien; Tresch, Achim (2014): Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. In: Molecular Systems Biology, Vol. 10, No. 12, 768 [PDF, 2MB]

Dümcke, Sebastian; Mansmann, Ulrich; Tresch, Achim (2014): A Novel Test for Independence Derived from an Exact Distribution of ith Nearest Neighbours.
In: PLOS ONE 9(10), e107955 [PDF, 1MB]

da Costa, Olivia Prazeres; Hoffman, Arthur; Rey, Johannes W.; Mansmann, Ulrich; Buch, Thorsten; Tresch, Achim (2014): Selection of Higher Order Regression Models in the Analysis of Multi-Factorial Transcription Data.
In: PLOS ONE 9(3), e91840 [PDF, 723kB]

Eser, Philipp; Demel, Carina; Maier, Kerstin C.; Schwalb, Björn; Pirkl, Nicole; Martin, Dietmar E.; Cramer, Patrick; Tresch, Achim (2014): Periodic mRNA synthesis and degradation co-operate during cell cycle gene expression. In: Molecular Systems Biology, Vol. 10, No. 1

Failmezger, Henrik; Froehlich, Holger; Tresch, Achim (2013): Unsupervised automated high throughput phenotyping of RNAi time-lapse movies. In: BMC Bioinformatics 14:292 [PDF, 2MB]

Norousi, Ramin; Wickles, Stephan; Leidig, Christoph; Becker, Thomas; Schmid, Volker J. ORCID: 0000-0003-2195-8130; Beckmann, Roland; Tresch, Achim (2013): Automatic post-picking using MAPPOS improves particle image detection from cryo-EM micrographs. In: Journal of Structural Biology, Vol. 182, No. 2: pp. 59-66

Norousi, Ramin; Wickles, Stephan; Leidig, Christoph; Tresch, Achim; Schmid, Volker J. ORCID: 0000-0003-2195-8130; Beckmann, Roland; Becker, Thomas (2013): Automatic post-picking improves particle image detection from Cryo-EM micrographs. In: Journal of Structural Biology, Vol. 182, No. 2: pp. 59-66

Niederberger, Theresa; Etzold, Stefanie; Lidschreiber, Michael; Maier, Kerstin C.; Martin, Dietmar E.; Fröhlich, Holger; Cramer, Patrick; Tresch, Achim (2012): MC EMiNEM maps the interaction landscape of the Mediator.
In: PLOS Computational Biology 8(6), e1002568 [PDF, 775kB]

Schmidt, Christine S.; Bultmann, Sebastian; Meilinger, Daniela; Zacher, Benedikt; Tresch, Achim; Maier, Kerstin C.; Peter, Christian; Martin, Dietmar E.; Leonhardt, Heinrich; Spada, Fabio (2012): Global DNA hypomethylation prevents consolidation of differentiation programs and allows reversion to the embryonic stem cell state.
In: PLOS ONE 7(12), e52629 [PDF, 1MB]

Gagneur, Julien; Elze, Markus C.; Tresch, Achim (2011): Selective Phenotyping, Entropy Reduction, and the Mastermind game. In: BMC Bioinformatics 12:406 [PDF, 465kB]

Krupp, Markus; Maass, Thorsten; Marquardt, Jens U.; Staib, Frank; Bauer, Tobias; Koenig, Rainer; Biesterfeld, Stefan; Galle, Peter R.; Tresch, Achim; Teufel, Andreas (2011): The functional cancer map: A systems-level synopsis of genetic deregulation in cancer. In: BMC Medical Genomics 4:53 [PDF, 2MB]

Zacher, Benedikt; Kuan, Pei Fen; Tresch, Achim (2010): Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data. In: BMC Bioinformatics 11:194 [PDF, 1MB]

Buness, Andreas; Ruschhaupt, Markus; Kuner, Ruprecht; Tresch, Achim (2009): Classification across gene expression microarray studies. In: BMC Bioinformatics 10:453 [PDF, 363kB]

Paper

Engelhardt, Alexander; Rieger, Anna; Tresch, Achim; Mansmann, Ulrich (19. December 2016): Efficient Maximum Likelihood Estimation for Pedigree Data with the Sum-Product Algorithm. Department of Statistics: Technical Reports, No.200 [PDF, 541kB]

This list was generated on Thu Dec 12 06:28:30 2019 CET.