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Publications by Zacher, Benedikt

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Number of items: 7.

Journal article

Zacher, Benedikt; Michel, Margaux; Schwalb, Björn; Cramer, Patrick; Tresch, Achim; Gagneur, Julien (2017): Accurate Promoter and Enhancer Identification in 127 ENCODE and Roadmap Epigenomics Cell Types and Tissues by GenoSTAN.
In: PLOS One 12(1), e0169249 [PDF, 6MB]

Michel, Margaux; Demel, Carina; Zacher, Benedikt; Schwalb, Björn; Krebs, Stefan; Blum, Helmut; Gagneur, Julien; Cramer, Patrick (2017): TT-seq captures enhancer landscapes immediately after T-cell stimulation. In: Molecular Systems Biology, Vol. 13, No. 3, 920

Glas, Julia; Dümcke, Sebastian; Zacher, Benedikt; Poron, Don; Gagneur, Julien; Tresch, Achim (2016): Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model. In: Nucleic Acids Research, Vol. 44, No. 5, e44 [PDF, 3MB]

Schwalb, Björn; Michel, Margaux; Zacher, Benedikt; Frühauf, Katja; Demel, Carina; Tresch, Achim; Gagneur, Julien; Cramer, Patrick (2016): TT-seq maps the human transient transcriptome. In: Science, Vol. 352, No. 6290: pp. 1225-1228

Zacher, Benedikt; Lidschreiber, Michael; Cramer, Patrick; Gagneur, Julien; Tresch, Achim (2014): Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle. In: Molecular Systems Biology, Vol. 10, No. 12, 768 [PDF, 2MB]

Schmidt, Christine S.; Bultmann, Sebastian; Meilinger, Daniela; Zacher, Benedikt; Tresch, Achim; Maier, Kerstin C.; Peter, Christian; Martin, Dietmar E.; Leonhardt, Heinrich; Spada, Fabio (2012): Global DNA hypomethylation prevents consolidation of differentiation programs and allows reversion to the embryonic stem cell state.
In: PLOS ONE 7(12), e52629 [PDF, 1MB]

Zacher, Benedikt; Kuan, Pei Fen; Tresch, Achim (2010): Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data. In: BMC Bioinformatics 11:194 [PDF, 1MB]

This list was generated on Sat Oct 23 00:34:41 2021 CEST.