GERNERMED++: Semantic annotation in German medical NLP through transfer-learning, translation and word alignment

Frei, Johann ; Frei-Stuber, Ludwig und Kramer, Frank (2023): GERNERMED++: Semantic annotation in German medical NLP through transfer-learning, translation and word alignment. In: Journal of Biomedical Informatics, Bd. 147, 104513

Abstract

We present a statistical model, GERNERMED++, for German medical natural language processing trained for named entity recognition (NER) as an open, publicly available model. We demonstrate the effectiveness of combining multiple techniques in order to achieve strong results in entity recognition performance by the means of transfer-learning on pre-trained deep language models (LM), word-alignment and neural machine translation, outperforming a pre-existing baseline model on several datasets. Due to the sparse situation of open, public medical entity recognition models for German texts, this work offers benefits to the German research community on medical NLP as a baseline model. The work serves as a refined successor to our first GERNERMED model. Similar to our previous work, our trained model is publicly available to other researchers.

• Dokumententyp: Zeitschriftenartikel
• Fakultät: Medizin > Institut und Poliklinik für Arbeits-, Sozial- und Umweltmedizin
• Themengebiete: 600 Technik, Medizin, angewandte Wissenschaften > 610 Medizin und Gesundheit
• ISSN: 15320464
• Bemerkung: The sample code and the statistical model is available at: https://github.com/frankkramer-lab/GERNERMED-pp
• Sprache: Englisch