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Anzahl der Publikationen: 15
Zeitschriftenartikel
Erhard, Florian; Saliba, Antoine-Emmanuel; Lusser, Alexandra; Toussaint, Christophe; Hennig, Thomas; Prusty, Bhupesh K.; Kirschenbaum, Daniel; Abadie, Kathleen; Miska, Eric A.; Friedel, Caroline C.; Amit, Ido; Micura, Ronald und Doelken, Lars
(2022):
Time-resolved single-cell RNA-seq using metabolic RNA labelling.
In: Nature Reviews Methods Primers, Bd. 2, Nr. 1, 77
Zernecke, Alma; Erhard, Florian; Weinberger, Tobias; Schulz, Christian; Ley, Klaus; Saliba, Antoine Emmanuel und Cochain, Clement
(2022):
Integrated single-cell analysis-based classification of vascular mononuclear phagocytes in mouse and human atherosclerosis.
In: Cardiovascular Research, Bd. 119, Nr. 8: S. 1676-1689
Friedel, Caroline C.; Whisnant, Adam W.; Djakovic, Lara; Rutkowski, Andrzej J.; Friedl, Marie-Sophie; Kluge, Michael; Williamson, James C.; Sai, Somesh; Vidal, Ramon Oliveira; Sauer, Sascha; Hennig, Thomas; Grothey, Arnhild; Milic, Andrea; Prusty, Bhupesh K.; Lehner, Paul J.; Matheson, Nicholas J.; Erhard, Florian und Doelken, Lars
(2021):
Dissecting Herpes Simplex Virus 1-Induced Host Shutoff at the RNA Level.
In: Journal of Virology, Bd. 95, Nr. 3, e01399-20
Wang, Xiuye 
ORCID: https://orcid.org/0000-0002-7756-3974; Liu, Liang ORCID: https://orcid.org/0000-0002-9655-204X; Whisnant, Adam W. ORCID: https://orcid.org/0000-0003-2039-2809; Hennig, Thomas ORCID: https://orcid.org/0000-0002-7788-1681; Djakovic, Lara ORCID: https://orcid.org/0000-0002-9368-9403; Haque, Nabila ORCID: https://orcid.org/0000-0003-3436-573X; Bach, Cindy ORCID: https://orcid.org/0000-0003-4727-4255; Sandri-Goldin, Rozanne M.; Erhard, Florian ORCID: https://orcid.org/0000-0002-3574-6983; Friedel, Caroline C. ORCID: https://orcid.org/0000-0003-3569-4877; Dölken, Lars ORCID: https://orcid.org/0000-0002-4651-3544 und Shi, Yongsheng ORCID: https://orcid.org/0000-0003-2967-1230
(2021):
Mechanism and consequences of herpes simplex virus 1-mediated regulation of host mRNA alternative polyadenylation.
In: PLOS Genetics 17(3), e1009263 [PDF, 3MB]
ORCID: https://orcid.org/0000-0002-7756-3974; Liu, Liang ORCID: https://orcid.org/0000-0002-9655-204X; Whisnant, Adam W. ORCID: https://orcid.org/0000-0003-2039-2809; Hennig, Thomas ORCID: https://orcid.org/0000-0002-7788-1681; Djakovic, Lara ORCID: https://orcid.org/0000-0002-9368-9403; Haque, Nabila ORCID: https://orcid.org/0000-0003-3436-573X; Bach, Cindy ORCID: https://orcid.org/0000-0003-4727-4255; Sandri-Goldin, Rozanne M.; Erhard, Florian ORCID: https://orcid.org/0000-0002-3574-6983; Friedel, Caroline C. ORCID: https://orcid.org/0000-0003-3569-4877; Dölken, Lars ORCID: https://orcid.org/0000-0002-4651-3544 und Shi, Yongsheng ORCID: https://orcid.org/0000-0003-2967-1230
(2021):
Mechanism and consequences of herpes simplex virus 1-mediated regulation of host mRNA alternative polyadenylation.
In: PLOS Genetics 17(3), e1009263 [PDF, 3MB]
Wang, Xiuye; Hennig, Thomas; Whisnant, Adam W.; Erhard, Florian; Prusty, Bhupesh K.; Friedel, Caroline C.; Forouzmand, Elmira; Hu, William; Erber, Luke; Chen, Yue; Sandri-Goldin, Rozanne M.; Doelken, Lars und Shi, Yongsheng
(2020):
Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27.
In: Nature Communications, Bd. 11, Nr. 1, 293
[PDF, 2MB]
Whisnant, Adam W.; Jürges, Christopher S.; Hennig, Thomas; Wyler, Emanuel; Prusty, Bhupesh; Rutkowski, Andrzej J.; L'hernault, Anne; Djakovic, Lara; Goebel, Margarete; Doering, Kristina; Menegatti, Jennifer; Antrobus, Robin; Matheson, Nicholas J.; Künzig, Florian W. H.; Mastrobuoni, Guido; Bielow, Chris; Kempa, Stefan; Liang, Chunguang; Dandekar, Thomas; Zimmer, Ralf; Landthaler, Markus; Graesser, Friedrich; Lehner, Paul J.; Friedel, Caroline C.; Erhard, Florian und Dölken, Lars
(2020):
Integrative functional genomics decodes herpes simplex virus 1.
In: Nature Communications, Bd. 11, Nr. 1, 2038
[PDF, 2MB]
Wei, Yuanyuan; Corbalan-Campos, Judit; Gurung, Rashmi; Natarelli, Lucia; Zhu, Mengyu; Exner, Nicole; Erhard, Florian; Greulich, Franziska; Geiler, Claudia; Uhlenhaut, N. Henriette; Zimmer, Ralf und Schober, Andreas
(2018):
Dicer in Macrophages Prevents Atherosclerosis by Promoting Mitochondrial Oxidative Metabolism.
In: Circulation, Bd. 138, Nr. 18: S. 2007-2020
[PDF, 7kB]
Hennig, Thomas; Michalski, Marco; Rutkowski, Andrzej J.; Djakovic, Lara; Whisnant, Adam W.; Friedl, Marie-Sophie; Jha, Bhaskar Anand; Baptista, Marisa A. P.; L'Hernault, Anne; Erhard, Florian; Doelken, Lars und Friedel, Caroline C.
(2018):
HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes.
In: PLOS Pathogens 14(3), e1006954 [PDF, 11MB]
In: PLOS Pathogens 14(3), e1006954 [PDF, 11MB]
Erhard, Florian; Halenius, Anne; Zimmermann, Cosima; L'Hernault, Anne; Kowalewski, Daniel J.; Weekes, Michael P.; Stevanovic, Stefan; Zimmer, Ralf und Doelken, Lars
(2018):
Improved Ribo-seq enables identification of cryptic translation events.
In: Nature Methods, Bd. 15, Nr. 5: S. 363-366
Glaser, Laura V.; Rieger, Simone; Thumann, Sybille; Beer, Sophie; Kuklik-Roos, Cornelia; Martin, Dietmar E.; Maier, Kerstin C.; Harth-Hertle, Marie L.; Grüning, Björn; Backofen, Rolf; Krebs, Stefan; Blum, Helmut; Zimmer, Ralf; Erhard, Florian und Kempkes, Bettina
(2017):
EBF1 binds to EBNA2 and promotes the assembly of EBNA2 chromatin complexes in B cells.
In: PLOS Pathogens 13(10), e1006664 [PDF, 8MB]
In: PLOS Pathogens 13(10), e1006664 [PDF, 8MB]
Erhard, Florian und Zimmer, Ralf
(2015):
Count ratio model reveals bias affecting NGS fold changes.
In: Nucleic Acids Research, Bd. 43, Nr. 20, e136
[PDF, 1MB]
Rutkowski, Andrzej J.; Erhard, Florian; L'Hernault, Anne; Bonfert, Thomas; Schilhabel, Markus; Crump, Colin; Rosenstiel, Philip; Efstathiou, Stacey; Zimmer, Ralf; Friedel, Caroline C. und Dölken, Lars
(2015):
Widespread disruption of host transcription termination in HSV-1 infection.
In: Nature Communications, Bd. 6, 7126
[PDF, 1MB]
Erhard, Florian; Doelken, Lars; Jaskiewicz, Lukasz und Zimmer, Ralf
(2013):
PARma: identification of microRNA target sites in AGO-PAR-CLIP data.
In: Genome Biology
14:R79
[PDF, 3MB]
Marcinowski, Lisa; Tanguy, Mélanie; Krmpotic, Astrid; Rädle, Bernd; Lisnić, Vanda J.; Tuddenham, Lee; Chane-Woon-Ming, Béatrice; Ruzsics, Zsolt; Erhard, Florian; Benkartek, Corinna; Babic, Marina; Zimmer, Ralf; Trgovcich, Joanne; Koszinowski, Ulrich H.; Jonjic, Stipan; Pfeffer, Sébastien und Dölken, Lars
(Februar 2012):
Degradation of cellular mir-27 by a novel, highly abundant viral transcript is important for efficient virus replication in vivo.
In: PLOS Pathogens 8(2), e1002510 [PDF, 1MB]
In: PLOS Pathogens 8(2), e1002510 [PDF, 1MB]
Erhard, Florian; Friedel, Caroline C. und Zimmer, Ralf
(2008):
FERN - a Java framework for stochastic simulation and evaluation of reaction networks.
In: BMC Bioinformatics
9:356
[PDF, 546kB]