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Eine Ebene höherGruppiert nach: Dokumententyp |
Veröffentlichungsdatum
Anzahl der Publikationen: 45
2022
Konrad, Sebastian F.; Vanderlinden, Willem und Lipfert, Jan
(2022):
Quantifying epigenetic modulation of nucleosome breathing by high-throughput AFM imaging.
In: Biophysical Journal, Bd. 121, Nr. 5: S. 841-851
Cruz-Leon, Sergio; Vanderlinden, Willem; Mueller, Peter; Forster, Tobias; Staudt, Georgina; Lin, Yi-Yun; Lipfert, Jan und Schwierz, Nadine
(2022):
Twisting DNA by salt.
In: Nucleic Acids Research, Bd. 50, Nr. 10: S. 5726-5738
Bauer, Magnus S.; Gruber, Sophia; Hausch, Adina; Gomes, Priscila S. F. C.; Milles, Lukas F.; Nicolaus, Thomas; Schendel, Leonard C.; Navajasg, Pilar Lopez; Procko, Erik; Lietha, Daniel; Melo, Marcelo C. R.; Bernardi, Rafael C.; Gaub, Hermann E. und Lipfert, Jan
(2022):
A tethered ligand assay to probe SARS-CoV-2:ACE2 interactions.
In: Proceedings of the National Academy of Sciences of the United States of America, Bd. 119, Nr. 14, e2114397119
Gruber, Sophia; Löf, Achim; Hausch, Adina; Kutzki, Fabian; Jöhr, Res; Obser, Tobias; König, Gesa; Schneppenheim, Reinhard; Aponte-Santamaria, Camilo; Gräter, Frauke; Brehm, Maria A.; Benoit, Martin und Lipfert, Jan
(2022):
A conformational transition of the D'D3 domain primes von Willebrand factor for multimerization.
In: Blood Advances, Bd. 6, Nr. 17: S. 5198-5209
[PDF, 2MB]
2021
Reichenwallner, Ann-Kathrin; Vurmaz, Esma; Battis, Kristina; Handl, Laura; Üstün, Helin; Mach, Tivadar; Hörnig, Gabriele; Lipfert, Jan und Richter, Lukas
(2021):
Optical Investigation of Individual Red Blood Cells for Determining Cell Count and Cellular Hemoglobin Concentration in a Microfluidic Channel.
In: Micromachines, Bd. 12, Nr. 4, 358
Konrad, Sebastian F.; Vanderlinden, Willem und Lipfert, Jan
(2021):
A High-throughput Pipeline to Determine DNA and Nucleosome Conformations by AFM Imaging.
In: Bio-Protocol, Bd. 11, Nr. 19, e4180
Konrad, Sebastian F.; Vanderlinden, Willem; Frederickx, Wout; Brouns, Tine; Menze, Björn H.; De Feyter, Steven und Lipfert, Jan
(2021):
High-throughput AFM analysis reveals unwrapping pathways of H3 and CENP-A nucleosomes.
In: Nanoscale, Bd. 13, Nr. 10: S. 5435-5447
Kolbeck, Pauline J.; Vanderlinden, Willem; Gemmecker, Gerd; Gebhardt, Christian; Lehmann, Martin; Lak, Aidin; Nicolaus, Thomas; Cordes, Thorben und Lipfert, Jan
(2021):
Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold.
In: Nucleic Acids Research, Bd. 49, Nr. 9: S. 5143-5158
Kolbeck, Pauline J.; Vanderlinden, Willem; Gemmecker, Gerd; Gebhardt, Christian; Lehmann, Martin; Lak, Aidin; Nicolaus, Thomas; Cordes, Thorben 
ORCID: https://orcid.org/0000-0002-8598-5499 und Lipfert, Jan
(2021):
Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold.
In: Nucleic acids research, Bd. 49, Nr. 9: S. 5143-5158
[PDF, 2MB]
ORCID: https://orcid.org/0000-0002-8598-5499 und Lipfert, Jan
(2021):
Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold.
In: Nucleic acids research, Bd. 49, Nr. 9: S. 5143-5158
[PDF, 2MB]
2020
Dohnalova, Hana; Drsata, Tomas; Sponer, Jiri; Zacharias, Martin; Lipfert, Jan und Lankas, Filip
(2020):
Compensatory Mechanisms in Temperature Dependence of DNA Double Helical Structure: Bending and Elongation.
In: Journal of Chemical Theory and Computation, Bd. 16, Nr. 4: S. 2857-2863
Ott, Katharina; Martini, Linda; Lipfert, Jan und Gerland, Ulrich
(2020):
Dynamics of the Buckling Transition in Double-Stranded DNA and RNA.
In: Biophysical Journal, Bd. 118, Nr. 7: S. 1690-1701
Vanderlinden, Willem; Kolbeck, Pauline J.; Kriegel, Franziska; Walker, Philipp U. und Lipfert, Jan
(2020):
A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint.
In: Data in Brief, Bd. 30, 105404
Gruber, Sophia; Loef, Achim; Sedlak, Steffen M.; Benoit, Martin; Gaub, Hermann E. und Lipfert, Jan
(2020):
Designed anchoring geometries determine lifetimes of biotin-streptavidin bonds under constant load and enable ultra-stable coupling.
In: Nanoscale, Bd. 12, Nr. 41: S. 21131-21137
Zhao, Shan; Todorov, Mihail Ivilinov; Cai, Ruiyao; Ai-Maskari, Rami; Steinke, Hanno; Kemter, Elisabeth; Mai, Hongcheng; Rong, Zhouyi; Warmer, Martin; Stanic, Karen; Schoppe, Oliver; Paetzold, Johannes Christian; Gesierich, Benno; Wong, Milagros N.; Huber, Tobias B.; Duering, Marco; Bruns, Oliver Thomas; Menze, Björn; Lipfert, Jan; Puelles, Victor G.; Wolf, Eckhard; Bechmann, Ingo und Ertuerk, Ali
(2020):
Cellular and Molecular Probing of Intact Human Organs.
In: Cell, Bd. 180, Nr. 4: S. 796-812
[PDF, 4MB]
Lak, Aidin; Kahmann, Tamara; Schaper, Simon Jakob; Obel, Jaroslava; Ludwig, Frank; Müller-Buschbaum, Peter und Lipfert, Jan
(2020):
The Dissociation Rate of Acetylacetonate Ligands Governs the Size of Ferrimagnetic Zinc Ferrite Nanocubes.
In: ACS Applied Materials & Interfaces, Bd. 12, Nr. 1: S. 217-226
Zettl, Thomas; Shi, Xuesong; Bonilla, Steve; Sedlak, Steffen M.; Lipfert, Jan und Herschlag, Daniel
(2020):
The structural ensemble of a Holliday junction determined by X-ray scattering interference.
In: Nucleic Acids Research, Bd. 48, Nr. 14: S. 8090-8098
2019
Vanderlinden, Willem; Kolbeck, Pauline J.; Frederickx, Wout; Konrad, Sebastian F.; Nicolaus, Thomas; Lampe, Carola; Urban, Alexander S.; Moucheron, Cecile und Lipfert, Jan
(2019):
Ru(TAP)(3)(2+) uses multivalent binding to accelerate and constrain photo-adduct formation on DNA.
In: Chemical Communications, Bd. 55, Nr. 60: S. 8764-8767
Loef, Achim; Walker, Philipp U.; Sedlak, Steffen M.; Gruber, Sophia; Obser, Tobias; Brehm, Maria A.; Benoit, Martin und Lipfert, Jan
(2019):
Multiplexed protein force spectroscopy reveals equilibrium protein folding dynamics and the low-force response of von Willebrand factor.
In: Proceedings of the National Academy of Sciences of the United States of America, Bd. 116, Nr. 38: S. 18798-18807
Vanderlinden, Willem; Brouns, Tine; Walker, Philipp U.; Kolbeck, Pauline J.; Milles, Lukas F.; Ott, Wolfgang; Nickels, Philipp C.; Debyser, Zeger und Lipfert, Jan
(2019):
The free energy landscape of retroviral integration.
In: Nature Communications, Bd. 10, 4738
[PDF, 3MB]
Pataskar, Abhijeet; Vanderlinden, Willem; Emmerig, Johannes; Singh, Aditi; Lipfert, Jan und Tiwari, Vijay K.
(2019):
Deciphering the Gene Regulatory Landscape Encoded in DNA Biophysical Features.
In: Iscience, Bd. 21
2018
Ivanovic, Milos T.; Bruetzel, Linda K.; Lipfert, Jan und Hub, Jochen S.
(2018):
Temperature-Dependent Atomic Models of Detergent Micelles Refined against Small-Angle X-Ray Scattering Data.
In: Angewandte Chemie-International Edition, Bd. 57, Nr. 20: S. 5635-5639
Walker, Philipp U.; Vanderlinden, Willem und Lipfert, Jan
(2018):
Dynamics and energy landscape of DNA plectoneme nucleation.
In: Physical Review E, Bd. 98, Nr. 4, 42412
Kriegel, Franziska; Matek, Christian; Drsata, Tomas; Kulenkampff, Klara; Tschirpke, Sophie; Zacharias, Martin; Lankas, Filip und Lipfert, Jan
(2018):
The temperature dependence of the helical twist of DNA.
In: Nucleic Acids Research, Bd. 46, Nr. 15: S. 7998-8009
[PDF, 1MB]
Oene, Maarten M. van; Ha, Seungkyu; Jager, Tessa; Lee, Mina; Pedaci, Francesco; Lipfert, Jan und Dekker, Nynke H.
(2018):
Quantifying the Precision of Single-Molecule Torque and Twist Measurements Using Allan Variance.
In: Biophysical Journal, Bd. 114, Nr. 8: S. 1970-1979
Ivanovic, Milos T.; Bruetzel, Linda K.; Shevchuk, Roman; Lipfert, Jan und Hub, Jochen S.
(2018):
Quantifying the influence of the ion cloud on SAXS profiles of charged proteins.
In: Physical Chemistry Chemical Physics, Bd. 20, Nr. 41: S. 26351-26361
Zettl, Thomas; Mathew, Rebecca S.; Shi, Xuesong; Doniach, Sebastian; Herschlag, Daniel; Harbury, Pehr A. B. und Lipfert, Jan
(2018):
Gold nanocrystal labels provide a sequence-to-3D structure map in SAXS reconstructions.
In: Science Advances, Bd. 4, Nr. 5, eaar4418
[PDF, 5MB]
Brouns, Tine; De Keersmaecker, Herlinde; Konrad, Sebastian F.; Kodera, Noriyuki; Ando, Toshio; Lipfert, Jan; De Feyter, Steven und Vanderlinden, Willem
(2018):
Free Energy Landscape and Dynamics of Supercoiled DNA by High-Speed Atomic Force Microscopy.
In: ACS Nano, Bd. 12, Nr. 12: S. 11907-11916
Brützel, Linda K.; Walker, Philipp U.; Gerling, Thomas; Dietz, Hendrik und Lipfert, Jan
(2018):
Time-Resolved Small-Angle X-ray Scattering Reveals Millisecond Transitions of a DNA Origami Switch.
In: Nano Letters, Bd. 18, Nr. 4: S. 2672-2676
Harrer, Nadine; Schindler, Christina E. M.; Bruetzel, Linda K.; Forne, Ignasi; Ludwigsen, Johanna; Imhof, Axel; Zacharias, Martin; Lipfert, Jan und Müller-Planitz, Felix
(2018):
Structural Architecture of the Nucleosome Remodeler ISWI Determined from Cross-Linking, Mass Spectrometry, SAXS, and Modeling.
In: Structure, Bd. 26, Nr. 2: S. 282-294
2017
Sedlak, Steffen M.; Brützel, Linda K. und Lipfert, Jan
(2017):
Quantitative evaluation of statistical errors in small-angle X-ray scattering measurements.
In: Journal of Applied Crystallography, Bd. 50: S. 621-630
Simoncelli, Sabrina; Johnson, Samuel; Kriegel, Franziska; Lipfert, Jan und Feldmann, Jochen
(2017):
Stretching and Heating Single DNA Molecules with Optically Trapped Gold-Silica Janus Particles.
In: ACS Photonics, Bd. 4, Nr. 11: S. 2843-2851
Kriegel, Franziska; Ermann, Niklas; Forbes, Ruaridh; Dulin, David; Dekker, Nynke H. und Lipfert, Jan
(2017):
Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers.
In: Nucleic Acids Research, Bd. 45, Nr. 10: S. 5920-5929
Nomidis, Stefanos K.; Kriegel, Franziska; Vanderlinden, Willem; Lipfert, Jan und Carlon, Enrico
(2017):
Twist-Bend Coupling and the Torsional Response of Double-Stranded DNA.
In: Physical Review Letters, Bd. 118, Nr. 21, 217801
Oene, Maarten M. van; Dickinson, Laura E.; Cross, Bronwen; Pedaci, Francesco; Lipfert, Jan und Dekker, Nynke H.
(2017):
Applying torque to the Escherichia coli flagellar motor using magnetic tweezers.
In: Scientific Reports, Bd. 7, 43285
[PDF, 3MB]
Vardanyan, Hayk; Sindbert, Simon; Kalinin, Stanislav; Hanke, Christian A.; Soltynski, Tomasz; Lach, Grzegorz; Springstubbe, Danilo; Apel, Bettina; Snell, Edward; Grant, Thomas D.; Lipfert, Jan; Müller, Sabine; Bujnicki, Janusz M.; Gohlke, Holger und Seidel, Claus A. M.
(2017):
FRET, SAXS and Molecular Simulations Resolve the Solution Structures of Three Coexisting Conformers of Flexible RNA Four-Way Junction.
In: Biophysical Journal, Bd. 112, Nr. 3:
367A-367A
Kriegel, Franziska; Ermann, Niklas und Lipfert, Jan
(2017):
Probing the mechanical properties, conformational changes, and interactions of nucleic acids with magnetic tweezers.
In: Journal of Structural Biology, Bd. 197, Nr. 1: S. 26-36
2016
Müller, Jochen P.; Mielke, Salomé; Löf, Achim; Obser, Tobias; Beer, Christof; Bruetzel, Linda K.; Pippig, Diana A.; Vanderlinden, Willem; Lipfert, Jan; Schneppenheim, Reinhard und Benoit, Martin
(2016):
Force sensing by the vascular protein von Willebrand factor is tuned by a strong intermonomer interaction.
In: Proceedings of the National Academy of Sciences of the United States of America, Bd. 113, Nr. 5: S. 1208-1213
Müller, Jochen P.; Löf, Achim; Mielke, Salomé; Obser, Tobias; Bruetzel, Linda K.; Vanderlinden, Willem; Lipfert, Jan; Schneppenheim, Reinhard und Benoit, Martin
(2016):
pH-Dependent Interactions in Dimers Govern the Mechanics and Structure of von Willebrand Factor.
In: Biophysical Journal, Bd. 111, Nr. 2: S. 312-322
Bruetzel, Linda K.; Gerling, Thomas; Sedlak, Steffen M.; Walker, Philipp U.; Zheng, Wenjun; Dietz, Hendrik und Lipfert, Jan
(2016):
Conformational Changes and Flexibility of DNA Devices Observed by Small-Angle X-ray Scattering.
In: Nano Letters, Bd. 16, Nr. 8: S. 4871-4879
Zettl, Thomas; Mathew, Rebecca S.; Seifer, Sönke; Doniach, Sebastian; Harbury, Pehr A. B. und Lipfert, Jan
(2016):
Absolute Intramolecular Distance Measurements with Angstrom-Resolution Using Anomalous Small-Angle X-ray Scattering.
In: Nano Letters, Bd. 16, Nr. 9: S. 5353-5357
Bruetzel, Linda K.; Fischer, Stefan; Salditt, Annalena; Sedlak, Steffen M.; Nickel, Bert und Lipfert, Jan
(2016):
A Mo-anode-based in-house source for small-angle X-ray scattering measurements of biological macromolecules.
In: Review of Scientific instruments, Bd. 87, Nr. 2, 25103
Schindler, Christina E. M.; Harrer, Nadine; Lipfert, Jan; Müller-Planitz, Felix und Zacharias, Martin
(2016):
Integrative Modeling of the ISWI Chromatin Remodeling Enzyme from Cross-Linking/Mass Spectrometry and Saxs Data.
In: Biophysical Journal, Bd. 110, Nr. 3:
237A-237A
2015
Liebl, Korbinian; Drsata, Tomas; Lankas, Filip; Lipfert, Jan und Zacharias, Martin
(2015):
Explaining the striking difference in twist-stretch coupling between DNA and RNA: A comparative molecular dynamics analysis.
In: Nucleic Acids Research, Bd. 43, Nr. 21: S. 10143-10156
[PDF, 7MB]
2014
Vanderlinden, Willem; Lipfert, Jan; Demeulemeester, Jonas; Debyser, Zeger und De Feyter, Steven
(29. Januar 2014):
Structure, mechanics, and binding mode heterogeneity of LEDGF/p75-DNA nucleoprotein complexes revealed by scanning force microscopy.
In: Nanoscale, Bd. 6, Nr. 9: S. 4611-4619
[PDF, 1MB]
Chou, Fang-Chieh; Lipfert, Jan und Das, Rhiju
(2014):
Blind Predictions of DNA and RNA Tweezers Experiments with Force and Torque.
In: PLOS Computational Biology 10(8), e1003756 [PDF, 3MB]
In: PLOS Computational Biology 10(8), e1003756 [PDF, 3MB]