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Gruppiert nach: Dokumententyp |
Veröffentlichungsdatum
Anzahl der Publikationen: 25
2022
Lutz, Konstantin; Musumeci, Andrea; Sie, Christopher; Dursun, Ezgi; Winheim, Elena; Bagnoli, Johannes; Ziegenhain, Christoph; Rausch, Lisa; Bergen, Volker; Luecken, Malte D.; Oostendorp, Robert A. J.; Schraml, Barbara U.; Theis, Fabian J.; Enard, Wolfgang; Korn, Thomas und Krug, Anne B.
(16. Juni 2022):
Ly6D+Siglec-H+ precursors contribute to conventional dendritic cells via a Zbtb46+Ly6D+ intermediary stage.
In: Nature Communications, Bd. 13
[PDF, 7MB]
Janjic, Aleksandar; Wange, Lucas E.; Bagnoli, Johannes W.; Geuder, Johanna; Nguyen, Phong; Richter, Daniel; Vieth, Beate; Vick, Binje; Jeremias, Irmela; Ziegenhain, Christoph; Hellmann, Ines und Enard, Wolfgang
(31. März 2022):
Prime-seq, efficient and powerful bulk RNA sequencing.
In: Genome Biology, Bd. 23
[PDF, 2MB]
Mentz, Michael; Keay, William 
ORCID: https://orcid.org/0000-0002-8794-7322; Strobl, Carolin Dorothea ORCID: https://orcid.org/0000-0003-2257-6281; Antoniolli, Martina ORCID: https://orcid.org/0000-0003-2720-9886; Adolph, Louisa; Heide, Michael; Lechner, Axel; Haebe, Sarah; Osterode, Elisa ORCID: https://orcid.org/0000-0003-4359-2096; Kridel, Robert ORCID: https://orcid.org/0000-0003-0287-7124; Ziegenhain, Christoph ORCID: https://orcid.org/0000-0003-2208-4877; Wange, Lucas Esteban ORCID: https://orcid.org/0000-0002-3275-9156; Hildebrand, Johannes Adrian ORCID: https://orcid.org/0000-0002-5451-8038; Shree, Tanaya ORCID: https://orcid.org/0000-0003-0694-3512; Silkenstedt, Elisabeth; Staiger, Annette M. ORCID: https://orcid.org/0000-0002-5896-3200; Ott, German; Horn, Heike; Szczepanowski, Monika; Richter, Julia ORCID: https://orcid.org/0000-0002-9543-4084; Levy, Ronald; Rosenwald, Andreas; Enard, Wolfgang; Zimber-Strobl, Ursula ORCID: https://orcid.org/0000-0002-9765-5251; Bergwelt-Baildon, Michael von; Hiddemann, Wolfgang; Klapper, Wolfram ORCID: https://orcid.org/0000-0001-7208-4117; Schmidt-Supprian, Marc; Rudelius, Martina; Bararia, Deepak; Passerini, Verena und Weigert, Oliver ORCID: https://orcid.org/0000-0002-0987-7373
(2022):
PARP14 is a novel target in STAT6 mutant follicular lymphoma.
In: Leukemia, Bd. 36, Nr. 9: S. 2281-2292
[PDF, 3MB]
ORCID: https://orcid.org/0000-0002-8794-7322; Strobl, Carolin Dorothea ORCID: https://orcid.org/0000-0003-2257-6281; Antoniolli, Martina ORCID: https://orcid.org/0000-0003-2720-9886; Adolph, Louisa; Heide, Michael; Lechner, Axel; Haebe, Sarah; Osterode, Elisa ORCID: https://orcid.org/0000-0003-4359-2096; Kridel, Robert ORCID: https://orcid.org/0000-0003-0287-7124; Ziegenhain, Christoph ORCID: https://orcid.org/0000-0003-2208-4877; Wange, Lucas Esteban ORCID: https://orcid.org/0000-0002-3275-9156; Hildebrand, Johannes Adrian ORCID: https://orcid.org/0000-0002-5451-8038; Shree, Tanaya ORCID: https://orcid.org/0000-0003-0694-3512; Silkenstedt, Elisabeth; Staiger, Annette M. ORCID: https://orcid.org/0000-0002-5896-3200; Ott, German; Horn, Heike; Szczepanowski, Monika; Richter, Julia ORCID: https://orcid.org/0000-0002-9543-4084; Levy, Ronald; Rosenwald, Andreas; Enard, Wolfgang; Zimber-Strobl, Ursula ORCID: https://orcid.org/0000-0002-9765-5251; Bergwelt-Baildon, Michael von; Hiddemann, Wolfgang; Klapper, Wolfram ORCID: https://orcid.org/0000-0001-7208-4117; Schmidt-Supprian, Marc; Rudelius, Martina; Bararia, Deepak; Passerini, Verena und Weigert, Oliver ORCID: https://orcid.org/0000-0002-0987-7373
(2022):
PARP14 is a novel target in STAT6 mutant follicular lymphoma.
In: Leukemia, Bd. 36, Nr. 9: S. 2281-2292
[PDF, 3MB]
2021
Boettcher, Anika; Buettner, Maren; Tritschler, Sophie; Sterr, Michael; Aliluev, Alexandra; Oppenlaender, Lena; Burtscher, Ingo; Sass, Steffen; Irmler, Martin; Beckers, Johannes; Ziegenhain, Christoph; Enard, Wolfgang; Schamberger, Andrea C.; Verhamme, Fien M.; Eickelberg, Oliver; Theis, Fabian J. und Lickert, Heiko
(2021):
Non-canonical Wnt/PCP signalling regulates intestinal stem cell lineage priming towards enteroendocrine and Paneth cell fates.
In: Nature Cell Biology, Bd. 23, Nr. 1
2020
Kober-Hasslacher, Maike; Oh-Strauss, Hyunju; Kumar, Dilip; Soberon, Valeria; Diehl, Carina; Lech, Maciej; Engleitner, Thomas; Katab, Eslam; Fernandez-Saiz, Jvanesa; Piontek, Guido; Li, Hongwei; Menze, Bjorn; Ziegenhain, Christoph; Enard, Wolfgang; Rad, Roland; Boettcher, Jan P.; Anders, Hans-Joachim; Rudelius, Martina und Schmidt-Supprian, Marc
(2020):
c-Rel gain in B cells drives germinal center reactions and autoantibody production.
In: Journal of Clinical Investigation, Bd. 130, Nr. 6: S. 3270-3286
Mereu, Elisabetta; Lafzi, Atefeh; Moutinho, Catia; Ziegenhain, Christoph; McCarthy, Davis J.; Alvarez-Varela, Adrian; Batlle, Eduard; Gruen, Dominic; Lau, Julia K.; Boutet, Stephane C.; Sanada, Chad; Ooi, Aik; Jones, Robert C.; Kaihara, Kelly; Brampton, Chris; Talaga, Yasha; Sasagawa, Yohei; Tanaka, Kaori; Hayashi, Tetsutaro; Braeuning, Caroline; Fischer, Cornelius; Sauers, Sascha; Trefzer, Timo; Conrad, Christian; Adiconis, Xian; Nguyen, Lan T.; Regev, Aviv; Levin, Joshua Z.; Parekh, Swati; Janjic, Aleksandar; Wange, Lucas E.; Bagnoli, Johannes W.; Enard, Wolfgang; Gut, Marta; Sandberg, Rickard; Nikaido, Itoshi; Gut, Ivo; Stegle, Oliver und Heyn, Holger
(2020):
Benchmarking single-cell RNA-sequencing protocols for cell atlas projects.
In: Nature Biotechnology, Bd. 38, Nr. 6: S. 747-755
Mulholland, Christopher B.; Nishiyama, Atsuya; Ryan, Joel; Nakamura, Ryohei; Yigit, Merve; Glueck, Ivo M.; Trummer, Carina; Qin, Weihua; Bartoschek, Michael D.; Traube, Franziska R.; Parsa, Edris; Ugur, Enes; Modic, Miha; Acharya, Aishwarya; Stolz, Paul; Ziegenhain, Christoph; Wierer, Michael; Enard, Wolfgang; Carell, Thomas; Lamb, Don C.; Takeda, Hiroyuki; Nakanashi, Makoto; Bultmann, Sebastian und Leonhardt, Heinrich
(2020):
Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals.
In: Nature Communications, Bd. 11, Nr. 1, 5972
[PDF, 8MB]
2019
Medvedeva, Vera P.; Rieger, Michael A.; Vieth, Beate; Mombereau, Cedric; Ziegenhain, Christoph; Ghosh, Tanay; Cressant, Arnaud; Enard, Wolfgang; Granon, Sylvie; Dougherty, Joseph D. und Groszer, Matthias
(2019):
Altered social behavior in mice carrying a cortical Foxp2 deletion.
In: Human Molecular Genetics, Bd. 28, Nr. 5: S. 701-717
Vieth, Beate; Parekh, Swati; Ziegenhain, Christoph; Enard, Wolfgang und Hellmann, Ines
(2019):
A systematic evaluation of single cell RNA-seq analysis pipelines.
In: Nature Communications, Bd. 10, 4667
[PDF, 3MB]
Wang, Shuaijun; Crevenna, Alvaro H.; Ugur, Ilke; Marion, Antoine; Antes, Iris; Kazmaier, Uli; Hoyer, Maria; Lamb, Don C.; Gegenfurtner, Florian; Kliesmetes, Zane; Ziegenhain, Christoph; Enard, Wolfgang; Vollmar, Angelika und Zahler, Stefan
(2019):
Actin stabilizing compounds show specific biological effects due to their binding mode.
In: Scientific Reports, Bd. 9, 9731
[PDF, 5MB]
Wang, Shuaijun; Gegenfurtner, Florian A.; Crevenna, Alvaro H.; Ziegenhain, Christoph; Kliesmete, Zane; Enard, Wolfgang; Müller, Rolf; Vollmar, Angelika M.; Schneider, Sabine und Zahler, Stefan
(2019):
Chivosazole A Modulates Protein Protein Interactions of Actin.
In: Journal of Natural Products, Bd. 82, Nr. 7: S. 1961-1970
2018
Bagnoli, Johannes W.; Ziegenhain, Christoph; Janjic, Aleksandar; Wange, Lucas E.; Vieth, Beate; Parekh, Swati; Geuder, Johanna; Hellmann, Ines und Enard, Wolfgang
(2018):
Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq.
In: Nature Communications, Bd. 9, 2937
[PDF, 1MB]
Parekh, Swati; Ziegenhain, Christoph; Vieth, Beate; Enard, Wolfgang und Hellmann, Ines
(2018):
zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs.
In: Gigascience, Bd. 7, Nr. 6
[PDF, 2MB]
Ziegenhain, Christoph; Vieth, Beate; Parekh, Swati; Hellmann, Ines und Enard, Wolfgang
(2018):
Quantitative single-cell transcriptomics.
In: Briefings in Functional Genomics, Bd. 17, Nr. 4: S. 220-232
Granato, Elisa T.; Ziegenhain, Christoph; Marvig, Rasmus L. und Kummerli, Rolf
(2018):
Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa.
In: Isme Journal, Bd. 12, Nr. 12: S. 2907-2918
Gegenfurtner, Florian A.; Zisis, Themistoklis; Al Danaf, Nader; Schrimpf, Waldemar; Kliesmete, Zane; Ziegenhain, Christoph; Enard, Wolfgang; Kazmaier, Uli; Lamb, Don C.; Vollmar, Angelika M. und Zahler, Stefan
(2018):
Transcriptional effects of actin-binding compounds: the cytoplasm sets the tone.
In: Cellular and Molecular Life Sciences, Bd. 75, Nr. 24: S. 4539-4555
Gegenfurtner, Florian A.; Jahn, Berenice; Wagner, Helga; Ziegenhain, Christoph; Enard, Wolfgang; Geistlinger, Ludwig; Rädler, Joachim O.; Vollmar, Angelika M. und Zahler, Stefan
(2018):
Micropatterning as a tool to identify regulatory triggers and kinetics of actin-mediated endothelial mechanosensing.
In: Journal of Cell Science, Bd. 131, Nr. 10
2017
Ziegenhain, Christoph; Vieth, Beate; Parekh, Swati; Reinius, Björn; Guillaumet-Adkins, Amy; Smets, Martha; Leonhardt, Heinrich; Heyn, Holger; Hellmann, Ines und Enard, Wolfgang
(2017):
Comparative Analysis of Single-Cell RNA Sequencing Methods.
In: Molecular Cell, Bd. 65, Nr. 4:
631-+
Vieth, Beate; Ziegenhain, Christoph; Parekh, Swati; Enard, Wolfgang und Hellmann, Ines
(2017):
powsimR: power analysis for bulk and single cell RNA-seq experiments.
In: Bioinformatics, Bd. 33, Nr. 21: S. 3486-3488
Krendl, Christian; Shaposhnikov, Dmitry; Rishko, Valentyna; Ori, Chaido; Ziegenhain, Christoph; Sass, Steffen; Simon, Lukas; Müller, Nikola S.; Straub, Tobias; Brooks, Kelsey E.; Chavez, Shawn L.; Enard, Wolfgang; Theis, Fabian J. und Drukker, Micha
(2017):
GATA2/3-TFAP2A/C transcription factor network couples human pluripotent stem cell differentiation to trophectoderm with repression of pluripotency.
In: Proceedings of the National Academy of Sciences of the United States of America, Bd. 114, Nr. 45, E9579-E9588
Schreck, Christina; Istvanffy, Rouzanna; Ziegenhain, Christoph; Sippenauer, Theresa; Ruf, Franziska; Henkel, Lynette; Gärtner, Florian; Vieth, Beate; Florian, M. Carolina; Mende, Nicole; Taubenberger, Anna; Prendergast, Aine; Wagner, Alina; Pagel, Charlotta; Grziwok, Sandra; Götze, Katharina S.; Guck, Jochen; Dean, Douglas C.; Massberg, Steffen; Essers, Marieke; Waskow, Claudia; Geiger, Hartmut; Schiemann, Mathias; Peschel, Christian; Enard, Wolfgang und Oostendorp, Robert A. J.
(2017):
Niche WNT5A regulates the actin cytoskeleton during regeneration of hematopoietic stem cells.
In: Journal of Experimental Medicine, Bd. 214, Nr. 1: S. 165-181
Witzel, Maximilian; Petersheim, Daniel; Fan, Yanxin; Bahrami, Ehsan; Racek, Tomas; Rohlfs, Meino; Puchalka, Jacek; Mertes, Christian; Gagneur, Julien; Ziegenhain, Christoph; Enard, Wolfgang; Stray-Pedersen, AsbJörg; Arkwright, Peter D.; Abboud, Miguel R.; Pazhakh, Vahid; Lieschke, Graham J.; Krawitz, Peter M.; Dahlhoff, Maik; Schneider, Marlon R.; Wolf, Eckhard; Horny, Hans-Peter; Schmidt, Heinrich; Schäffer, Alejandro A. und Klein, Christoph
(2017):
Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes.
In: Nature Genetics, Bd. 49, Nr. 5: S. 742-752
2016
Parekh, Swati; Ziegenhain, Christoph; Vieth, Beate; Enard, Wolfgang und Hellmann, Ines
(2016):
The impact of amplification on differential expression analyses by RNA-seq.
In: Scientific Reports, Bd. 6, 25533
[PDF, 1MB]
Oezdemir, Erbey; Oezdemir, Erbey; Ebinger, Sarah; Tiedt, Sebastian; Alves, Catarina Castro; Ziegenhain, Christoph; Enard, Wolfgang; Schepers, Aloys und Jeremias, Innela
(2016):
A rare subpopulation of dormant, drug resistant stem cells in all mimics cells of minimal residual disease.
In: Experimental Hematology, Bd. 44, Nr. 9:
S94-S94
Ebinger, Sarah; Özdemir, Erbey Ziya; Ziegenhain, Christoph; Tiedt, Sebastian; Castro Alves, Catarina; Grunert, Michaela; Dworzak, Michael; Lutz, Christoph; Turati, Virginia A.; Enver, Tariq; Horny, Hans-Peter; Sotlar, Karl; Parekh, Swati; Spiekermann, Karsten; Hiddemann, Wolfgang; Schepers, Aloys; Polzer, Bernhard; Kirsch, Stefan; Hoffmann, Martin; Knapp, Bettina; Hasenauer, Jan; Pfeifer, Heike; Panzer-Grümayer, Renate; Enard, Wolfgang; Gires, Olivier und Jeremias, Irmela
(2016):
Characterization of Rare, Dormant, and Therapy-Resistant Cells in Acute Lymphoblastic Leukemia.
In: Cancer Cell, Bd. 30, Nr. 6: S. 849-862