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Publications by Ziegenhain, Christoph

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Number of items: 14.

Journal article

Gegenfurtner, Florian A.; Jahn, Berenice; Wagner, Helga; Ziegenhain, Christoph; Enard, Wolfgang; Geistlinger, Ludwig; Rädler, Joachim O.; Vollmar, Angelika M.; Zahler, Stefan (2018): Micropatterning as a tool to identify regulatory triggers and kinetics of actin-mediated endothelial mechanosensing. In: Journal of Cell Science, Vol. 131, No. 10

Gegenfurtner, Florian A.; Zisis, Themistoklis; Al Danaf, Nader; Schrimpf, Waldemar; Kliesmete, Zane; Ziegenhain, Christoph; Enard, Wolfgang; Kazmaier, Uli; Lamb, Don C.; Vollmar, Angelika M.; Zahler, Stefan (2018): Transcriptional effects of actin-binding compounds: the cytoplasm sets the tone. In: Cellular and Molecular Life Sciences, Vol. 75, No. 24: pp. 4539-4555

Granato, Elisa T.; Ziegenhain, Christoph; Marvig, Rasmus L.; Kummerli, Rolf (2018): Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in Pseudomonas aeruginosa. In: Isme Journal, Vol. 12, No. 12: pp. 2907-2918

Ziegenhain, Christoph; Vieth, Beate; Parekh, Swati; Hellmann, Ines; Enard, Wolfgang (2018): Quantitative single-cell transcriptomics. In: Briefings in Functional Genomics, Vol. 17, No. 4: pp. 220-232

Bagnoli, Johannes W.; Ziegenhain, Christoph; Janjic, Aleksandar; Wange, Lucas E.; Vieth, Beate; Parekh, Swati; Geuder, Johanna; Hellmann, Ines; Enard, Wolfgang (2018): Sensitive and powerful single-cell RNA sequencing using mcSCRB-seq. In: Nature Communications, Vol. 9, 2937 [PDF, 1MB]

Parekh, Swati; Ziegenhain, Christoph; Vieth, Beate; Enard, Wolfgang; Hellmann, Ines (2018): zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs. In: Gigascience, Vol. 7, No. 6 [PDF, 2MB]

Witzel, Maximilian; Petersheim, Daniel; Fan, Yanxin; Bahrami, Ehsan; Racek, Tomas; Rohlfs, Meino; Puchalka, Jacek; Mertes, Christian; Gagneur, Julien; Ziegenhain, Christoph; Enard, Wolfgang; Stray-Pedersen, AsbJörg; Arkwright, Peter D.; Abboud, Miguel R.; Pazhakh, Vahid; Lieschke, Graham J.; Krawitz, Peter M.; Dahlhoff, Maik; Schneider, Marlon R.; Wolf, Eckhard; Horny, Hans-Peter; Schmidt, Heinrich; Schäffer, Alejandro A.; Klein, Christoph (2017): Chromatin-remodeling factor SMARCD2 regulates transcriptional networks controlling differentiation of neutrophil granulocytes. In: Nature Genetics, Vol. 49, No. 5: pp. 742-752

Schreck, Christina; Istvanffy, Rouzanna; Ziegenhain, Christoph; Sippenauer, Theresa; Ruf, Franziska; Henkel, Lynette; Gärtner, Florian; Vieth, Beate; Florian, M. Carolina; Mende, Nicole; Taubenberger, Anna; Prendergast, Aine; Wagner, Alina; Pagel, Charlotta; Grziwok, Sandra; Götze, Katharina S.; Guck, Jochen; Dean, Douglas C.; Massberg, Steffen; Essers, Marieke; Waskow, Claudia; Geiger, Hartmut; Schiemann, Mathias; Peschel, Christian; Enard, Wolfgang; Oostendorp, Robert A. J. (2017): Niche WNT5A regulates the actin cytoskeleton during regeneration of hematopoietic stem cells. In: Journal of Experimental Medicine, Vol. 214, No. 1: pp. 165-181

Krendl, Christian; Shaposhnikov, Dmitry; Rishko, Valentyna; Ori, Chaido; Ziegenhain, Christoph; Sass, Steffen; Simon, Lukas; Müller, Nikola S.; Straub, Tobias; Brooks, Kelsey E.; Chavez, Shawn L.; Enard, Wolfgang; Theis, Fabian J.; Drukker, Micha (2017): GATA2/3-TFAP2A/C transcription factor network couples human pluripotent stem cell differentiation to trophectoderm with repression of pluripotency. In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 114, No. 45, E9579-E9588

Vieth, Beate; Ziegenhain, Christoph; Parekh, Swati; Enard, Wolfgang; Hellmann, Ines (2017): powsimR: power analysis for bulk and single cell RNA-seq experiments. In: Bioinformatics, Vol. 33, No. 21: pp. 3486-3488

Ziegenhain, Christoph; Vieth, Beate; Parekh, Swati; Reinius, Björn; Guillaumet-Adkins, Amy; Smets, Martha; Leonhardt, Heinrich; Heyn, Holger; Hellmann, Ines; Enard, Wolfgang (2017): Comparative Analysis of Single-Cell RNA Sequencing Methods. In: Molecular Cell, Vol. 65, No. 4: 631-+

Parekh, Swati; Ziegenhain, Christoph; Vieth, Beate; Enard, Wolfgang; Hellmann, Ines (2016): The impact of amplification on differential expression analyses by RNA-seq. In: Scientific Reports, Vol. 6, 25533 [PDF, 1MB]

Ebinger, Sarah; Özdemir, Erbey Ziya; Ziegenhain, Christoph; Tiedt, Sebastian; Castro Alves, Catarina; Grunert, Michaela; Dworzak, Michael; Lutz, Christoph; Turati, Virginia A.; Enver, Tariq; Horny, Hans-Peter; Sotlar, Karl; Parekh, Swati; Spiekermann, Karsten; Hiddemann, Wolfgang; Schepers, Aloys; Polzer, Bernhard; Kirsch, Stefan; Hoffmann, Martin; Knapp, Bettina; Hasenauer, Jan; Pfeifer, Heike; Panzer-Grümayer, Renate; Enard, Wolfgang; Gires, Olivier; Jeremias, Irmela (2016): Characterization of Rare, Dormant, and Therapy-Resistant Cells in Acute Lymphoblastic Leukemia. In: Cancer Cell, Vol. 30, No. 6: pp. 849-862

Oezdemir, Erbey; Oezdemir, Erbey; Ebinger, Sarah; Tiedt, Sebastian; Alves, Catarina Castro; Ziegenhain, Christoph; Enard, Wolfgang; Schepers, Aloys; Jeremias, Innela (2016): A rare subpopulation of dormant, drug resistant stem cells in all mimics cells of minimal residual disease. In: Experimental Hematology, Vol. 44, No. 9: S94-S94

This list was generated on Sat Oct 16 00:03:40 2021 CEST.