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Springe zu: B | G | H | I | J | K | L | M | P | R | S | T | V
Anzahl der Publikationen auf dieser Ebene: 22

B

Boer, Marijn de; Gouridis, Giorgos; Muthahari, Yusran Abdillah und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2019): Single-Molecule Observation of Ligand Binding and Conformational Changes in FeuA. In: Biophysical journal, Bd. 117, Nr. 9: S. 1642-1654 [PDF, 1MB]

Boer, Marijn de; Gouridis, Giorgos; Vietrov, Ruslan; Begg, Stephanie L.; Schuurman-Wolters, Gea K.; Husada, Florence; Eleftheriadis, Nikolaos; Poolman, Bert; McDevitt, Christopher A. und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2019): Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers. In: eLife, Bd. 8, e44652 [PDF, 2MB]

G

Gouridis, Giorgos; Hetzert, Bianca; Kiosze-Becker, Kristin; Boer, Marijnde; Heinemann, Holger; Nürenberg-Goloub, Elina; Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 und Tampé, Robert (2019): ABCE1 Controls Ribosome Recycling by an Asymmetric Dynamic Conformational Equilibrium. In: Cell reports, Bd. 28, Nr. 3, e6: S. 723-734 [PDF, 3MB]

H

Hellenkamp, Björn; Schmid, Sonja; Doroshenko, Olga; Opanasyuk, Oleg; Kühnemuth, Ralf; Adariani, Soheila Rezaei; Ambrose, Benjamin; Aznauryan, Mikayel; Barth, Anders; Birkedal, Victoria; Bowen, Mark E.; Chen, Hongtao; Cordes, Thorben; Eilert, Tobias; Fijen, Carel; Gebhardt, Christian; Götz, Markus; Gouridis, Giorgos; Gratton, Enrico; Ha, Taekjip; Hao, Pengyu; Hanke, Christian A.; Hartmann, Andreas; Hendrix, Jelle; Hildebrandt, Lasse L.; Hirschfeld, Verena; Hohlbein, Johannes; Hua, Boyang; Hübner, Christian G.; Kallis, Eleni; Kapanidis, Achillefs N.; Kim, Jae-Yeol; Krainer, Georg; Lamb, Don C.; Lee, Nam Ki; Lemke, Edward A.; Levesque, Brie; Levitus, Marcia; McCann, James J.; Naredi-Rainer, Nikolaus; Nettels, Daniel; Ngo, Thuy; Qiu, Ruoyi; Robb, Nicole C.; Röcker, Carlheinz; Sanabria, Hugo; Schlierf, Michael; Schröder, Tim; Schuler, Benjamin; Seidel, Henning; Streit, Lisa; Thurn, Johann; Tinnefeld, Philip; Tyagi, Swati; Vandenberk, Niels; Vera, Andres Manuel; Weninger, Keith R.; Wunsch, Bettina; Yanez-Orozco, Inna S.; Michaelis, Jens; Seidel, Claus A. M.; Craggs, Timothy D. und Hugel, Thorsten (2018): Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. In: Nature Methods, Bd. 15, Nr. 9: S. 669-676 [PDF, 4MB]

Henrikus, Sarah S.; Tassis, Konstantinos; Zhang, Lei; Velde, Jasper H. M. van der; Gebhardt, Christian; Herrmann, Andreas; Jung, Gregor ORCID logoORCID: https://orcid.org/0000-0002-2438-7436 und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2. Dezember 2021): Characterization of fluorescent proteins with intramolecular photostabilization. In: ChemBioChem, Bd. 22, Nr. 23: S. 3234

Henrikus, Sarah S.; Tassis, Konstantinos; Zhang, Lei; Velde, Jasper H. M. van der; Gebhardt, Christian; Herrmann, Andreas; Jung, Gregor und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2020): Characterization of fluorescent proteins with intramolecular photostabilization. bioRxiv [PDF, 3MB]

Husada, Florence; Bountra, Kiran; Tassis, Konstantinos; Bör, Marijn de; Romano, Maria; Rebuffat, Sylvie; Beis, Konstantinos und Cordes, Thorben (2018): Conformational dynamics of the ABC transporter McjD seen by single-molecule FRET. In: EMBO Journal, Bd. 37, Nr. 21, e100056 [PDF, 1MB]

I

Isselstein, Michael; Zhang, Lei; Glembockyte, Viktorija; Brix, Oliver; Cosa, Gonzalo; Tinnefeld, Philip und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2020): Self-Healing Dyes - Keeping the Promise? In: Journal of physical chemistry letters, Bd. 11, Nr. 11: S. 4462-4480 [PDF, 12MB]

J

Jazi, Atieh Aminian; Plötz, Evelyn; Arizki, Muhamad; Dhandayuthapani, Balasubramaniam; Waclawska, Izabela; Kramer, Reinhard; Ziegler, Christine und Cordes, Thorben (2017): Caging and Photoactivation in Single-Molecule Forster Resonance Energy Transfer Experiments. In: Biochemistry, Bd. 56, Nr. 14: S. 2031-2041 [PDF, 3MB]

K

Kolbeck, Pauline J.; Vanderlinden, Willem; Gemmecker, Gerd; Gebhardt, Christian; Lehmann, Martin; Lak, Aidin; Nicolaus, Thomas; Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 und Lipfert, Jan (2021): Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold. In: Nucleic acids research, Bd. 49, Nr. 9: S. 5143-5158 [PDF, 2MB]

L

Lerner, Eitan; Barth, Anders; Hendrix, Jelle; Ambrose, Benjamin; Birkedal, Victoria; Blanchard, Scott C.; Börner, Richard; Sung Chung, Hoi; Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499; Craggs, Timothy D.; Deniz, Ashok A.; Diao, Jiajie; Fei, Jingyi; Gonzalez, Ruben L.; Gopich, Irina V.; Ha, Taekjip; Hanke, Christian A.; Haran, Gilad; Hatzakis, Nikos S.; Hohng, Sungchul; Hong, Seok-Cheol; Hugel, Thorsten; Ingargiola, Antonino; Joo, Chirlmin; Kapanidis, Achillefs N.; Kim, Harold D.; Laurence, Ted; Lee, Nam Ki; Lee, Tae-Hee; Lemke, Edward A.; Margeat, Emmanuel; Michaelis, Jens; Michalet, Xavier; Myong, Sua; Nettels, Daniel; Peulen, Thomas-Otavio; Ploetz, Evelyn; Razvag, Yair; Robb, Nicole C.; Schuler, Benjamin; Soleimaninejad, Hamid; Tang, Chun; Vafabakhsh, Reza; Lamb, Don C.; Am Seidel, Claus und Weiss, Shimon (2021): FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices. In: eLife, Bd. 10, e60416 [PDF, 6MB]

Lerner, Eitan; Cordes, Thorben; Ingargiola, Antonino; Alhadid, Yazan; Chung, SangYoon; Michalet, Xavier und Weiss, Shimon (2018): Toward dynamic structural biology: Two decades of single-molecule Forster resonance energy transfer. In: Science, Bd. 359, Nr. 6373, eaan1133

Lerner, Eitan; Ploetz, Evelyn; Hohlbein, Johannes; Cordes, Thorben und Weiss, Shimon (2016): A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Forster-Type Resonance Energy Transfer (PIFE-FRET). In: Journal of Physical Chemistry B, Bd. 120, Nr. 26: S. 6401-6410

M

Mächtel, Rebecca; Gebhardt, Christian und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2018): Konformationsbewegungen von aktiven Membrantransportern. In: BIOspektrum, Bd. 24, Nr. 5: S. 495-497 [PDF, 447kB]

Mächtel, Rebecca; Narducci, Alessandra; Griffith, Douglas A.; Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 und Orelle, Cédric (November 2019): An integrated transport mechanism of the maltose ABC importer. In: Research in microbiology, Bd. 170, Nr. 8: S. 321-337 [PDF, 3MB]

P

Ploetz, Evelyn; Lerner, Eitan; Husada, Florence; Roelfs, Martin; Chung, SangYoon; Hohlbein, Johannes; Weiss, Shimon und Cordes, Thorben (2016): Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multiscale molecular rulers. In: Scientific Reports, Bd. 6, 33257 [PDF, 2MB]

R

Robb, Nicole C.; Velthuis, Aartjan J. W. te; Wieneke, Ralph; Tampé, Robert; Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499; Fodor, Ervin und Kapanidis, Achillefs N. (2016): Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA. In: Nucleic acids research, Bd. 44, Nr. 21: S. 10304-10315 [PDF, 4MB]

S

Smit, Jochem H.; Li, Yichen; Warszawik, Eliza M.; Herrmann, Andreas und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2019): ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data.
In: PloS one 14(6), e0217524 [PDF, 2MB]

Smit, Jochem H. ORCID logoORCID: https://orcid.org/0000-0002-3597-9429; Velde, Jasper H. M. van der; Huang, Jingyi; Trauschke, Vanessa; Henrikus, Sarah S.; Chen, Si; Eleftheriadis, Nikolaos; Warszawik, Eliza M.; Herrmann, Andreas ORCID logoORCID: https://orcid.org/0000-0002-8886-0894 und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2019): On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores. In: Physical chemistry chemical physics : PCCP, Bd. 21, Nr. 7: S. 3721-3733 [PDF, 4MB]

T

Tassis, Konstantinos; Vietrov, Ruslan; Koning, Matthijs de; Boer, Marijn de; Gouridis, Giorgos und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2021): Single-molecule studies of conformational states and dynamics in the ABC importer OpuA. In: FEBS letters, Bd. 595, Nr. 6: S. 717-734 [PDF, 1MB]

V

Velde, Jasper H. M. van der; Smit, Jochem H. ORCID logoORCID: https://orcid.org/0000-0002-3597-9429; Hebisch, Elke; Trauschke, Vanessa; Punter, Michiel und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2019): Self-healing dyes for super-resolution fluorescence microscopy. In: Journal of Physics D: Applied Physics, Bd. 52, Nr. 3, 034001 [PDF, 7MB]

Velde, Jens van der; Oelerich, Jens; Huang, Jingyi; Smit, Jochem H.; Jazi, Atieh Aminian; Galiani, Silvia; Kolmakov, Kirill; Guoridis, Giorgos; Eggeling, Christian; Herrmann, Andreas; Roelfes, Gerard und Cordes, Thorben ORCID logoORCID: https://orcid.org/0000-0002-8598-5499 (2016): A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization. In: Nature communications, Bd. 7, 10144 [PDF, 1MB]

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