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Horizon 2020 > ERC Grants > ERC Starting Grant > ERC Grant 638536: SM-IMPORT - Substrate import at work: single-molecule studies of ABC transporters

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Number of items at this level: 22.

2021

Henrikus, Sarah S.; Tassis, Konstantinos; Zhang, Lei; Velde, Jasper H. M. van der; Gebhardt, Christian; Herrmann, Andreas; Jung, Gregor ORCID: 0000-0002-2438-7436; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2. December 2021): Characterization of fluorescent proteins with intramolecular photostabilization. In: ChemBioChem, Vol. 22, No. 23: p. 3234

Kolbeck, Pauline J.; Vanderlinden, Willem; Gemmecker, Gerd; Gebhardt, Christian; Lehmann, Martin; Lak, Aidin; Nicolaus, Thomas; Cordes, Thorben ORCID: 0000-0002-8598-5499; Lipfert, Jan (2021): Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold. In: Nucleic acids research, Vol. 49, No. 9: pp. 5143-5158 [PDF, 2MB]

Lerner, Eitan; Barth, Anders; Hendrix, Jelle; Ambrose, Benjamin; Birkedal, Victoria; Blanchard, Scott C.; Börner, Richard; Sung Chung, Hoi; Cordes, Thorben ORCID: 0000-0002-8598-5499; Craggs, Timothy D.; Deniz, Ashok A.; Diao, Jiajie; Fei, Jingyi; Gonzalez, Ruben L.; Gopich, Irina V.; Ha, Taekjip; Hanke, Christian A.; Haran, Gilad; Hatzakis, Nikos S.; Hohng, Sungchul; Hong, Seok-Cheol; Hugel, Thorsten; Ingargiola, Antonino; Joo, Chirlmin; Kapanidis, Achillefs N.; Kim, Harold D.; Laurence, Ted; Lee, Nam Ki; Lee, Tae-Hee; Lemke, Edward A.; Margeat, Emmanuel; Michaelis, Jens; Michalet, Xavier; Myong, Sua; Nettels, Daniel; Peulen, Thomas-Otavio; Ploetz, Evelyn; Razvag, Yair; Robb, Nicole C.; Schuler, Benjamin; Soleimaninejad, Hamid; Tang, Chun; Vafabakhsh, Reza; Lamb, Don C.; Am Seidel, Claus; Weiss, Shimon (2021): FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices. In: eLife, Vol. 10, e60416 [PDF, 6MB]

Tassis, Konstantinos; Vietrov, Ruslan; Koning, Matthijs de; Boer, Marijn de; Gouridis, Giorgos; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2021): Single-molecule studies of conformational states and dynamics in the ABC importer OpuA. In: FEBS letters, Vol. 595, No. 6: pp. 717-734 [PDF, 1MB]

2020

Henrikus, Sarah S.; Tassis, Konstantinos; Zhang, Lei; Velde, Jasper H. M. van der; Gebhardt, Christian; Herrmann, Andreas; Jung, Gregor; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2020): Characterization of fluorescent proteins with intramolecular photostabilization. bioRxiv [PDF, 3MB]

Isselstein, Michael; Zhang, Lei; Glembockyte, Viktorija; Brix, Oliver; Cosa, Gonzalo; Tinnefeld, Philip; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2020): Self-Healing Dyes - Keeping the Promise? In: Journal of physical chemistry letters, Vol. 11, No. 11: pp. 4462-4480 [PDF, 12MB]

2019

Boer, Marijn de; Gouridis, Giorgos; Muthahari, Yusran Abdillah; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2019): Single-Molecule Observation of Ligand Binding and Conformational Changes in FeuA. In: Biophysical journal, Vol. 117, No. 9: pp. 1642-1654 [PDF, 1MB]

Boer, Marijn de; Gouridis, Giorgos; Vietrov, Ruslan; Begg, Stephanie L.; Schuurman-Wolters, Gea K.; Husada, Florence; Eleftheriadis, Nikolaos; Poolman, Bert; McDevitt, Christopher A.; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2019): Conformational and dynamic plasticity in substrate-binding proteins underlies selective transport in ABC importers. In: eLife, Vol. 8, e44652 [PDF, 2MB]

Gouridis, Giorgos; Hetzert, Bianca; Kiosze-Becker, Kristin; Boer, Marijnde; Heinemann, Holger; Nürenberg-Goloub, Elina; Cordes, Thorben ORCID: 0000-0002-8598-5499; Tampé, Robert (2019): ABCE1 Controls Ribosome Recycling by an Asymmetric Dynamic Conformational Equilibrium. In: Cell reports, Vol. 28, No. 3, e6: pp. 723-734 [PDF, 3MB]

Mächtel, Rebecca; Narducci, Alessandra; Griffith, Douglas A.; Cordes, Thorben ORCID: 0000-0002-8598-5499; Orelle, Cédric (November 2019): An integrated transport mechanism of the maltose ABC importer. In: Research in microbiology, Vol. 170, No. 8: pp. 321-337 [PDF, 3MB]

Smit, Jochem H.; Li, Yichen; Warszawik, Eliza M.; Herrmann, Andreas; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2019): ColiCoords: A Python package for the analysis of bacterial fluorescence microscopy data.
In: PloS one 14(6), e0217524 [PDF, 2MB]

Smit, Jochem H. ORCID: 0000-0002-3597-9429; Velde, Jasper H. M. van der; Huang, Jingyi; Trauschke, Vanessa; Henrikus, Sarah S.; Chen, Si; Eleftheriadis, Nikolaos; Warszawik, Eliza M.; Herrmann, Andreas ORCID: 0000-0002-8886-0894; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2019): On the impact of competing intra- and intermolecular triplet-state quenching on photobleaching and photoswitching kinetics of organic fluorophores. In: Physical chemistry chemical physics : PCCP, Vol. 21, No. 7: pp. 3721-3733 [PDF, 4MB]

Velde, Jasper H. M. van der; Smit, Jochem H. ORCID: 0000-0002-3597-9429; Hebisch, Elke; Trauschke, Vanessa; Punter, Michiel; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2019): Self-healing dyes for super-resolution fluorescence microscopy. In: Journal of Physics D: Applied Physics, Vol. 52, No. 3, 034001 [PDF, 7MB]

2018

Hellenkamp, Björn; Schmid, Sonja; Doroshenko, Olga; Opanasyuk, Oleg; Kühnemuth, Ralf; Adariani, Soheila Rezaei; Ambrose, Benjamin; Aznauryan, Mikayel; Barth, Anders; Birkedal, Victoria; Bowen, Mark E.; Chen, Hongtao; Cordes, Thorben; Eilert, Tobias; Fijen, Carel; Gebhardt, Christian; Götz, Markus; Gouridis, Giorgos; Gratton, Enrico; Ha, Taekjip; Hao, Pengyu; Hanke, Christian A.; Hartmann, Andreas; Hendrix, Jelle; Hildebrandt, Lasse L.; Hirschfeld, Verena; Hohlbein, Johannes; Hua, Boyang; Hübner, Christian G.; Kallis, Eleni; Kapanidis, Achillefs N.; Kim, Jae-Yeol; Krainer, Georg; Lamb, Don C.; Lee, Nam Ki; Lemke, Edward A.; Levesque, Brie; Levitus, Marcia; McCann, James J.; Naredi-Rainer, Nikolaus; Nettels, Daniel; Ngo, Thuy; Qiu, Ruoyi; Robb, Nicole C.; Röcker, Carlheinz; Sanabria, Hugo; Schlierf, Michael; Schröder, Tim; Schuler, Benjamin; Seidel, Henning; Streit, Lisa; Thurn, Johann; Tinnefeld, Philip; Tyagi, Swati; Vandenberk, Niels; Vera, Andres Manuel; Weninger, Keith R.; Wunsch, Bettina; Yanez-Orozco, Inna S.; Michaelis, Jens; Seidel, Claus A. M.; Craggs, Timothy D.; Hugel, Thorsten (2018): Precision and accuracy of single-molecule FRET measurements-a multi-laboratory benchmark study. In: Nature Methods, Vol. 15, No. 9: pp. 669-676 [PDF, 4MB]

Husada, Florence; Bountra, Kiran; Tassis, Konstantinos; Bör, Marijn de; Romano, Maria; Rebuffat, Sylvie; Beis, Konstantinos; Cordes, Thorben (2018): Conformational dynamics of the ABC transporter McjD seen by single-molecule FRET. In: EMBO Journal, Vol. 37, No. 21, e100056 [PDF, 1MB]

Lerner, Eitan; Cordes, Thorben; Ingargiola, Antonino; Alhadid, Yazan; Chung, SangYoon; Michalet, Xavier; Weiss, Shimon (2018): Toward dynamic structural biology: Two decades of single-molecule Forster resonance energy transfer. In: Science, Vol. 359, No. 6373, eaan1133

Mächtel, Rebecca; Gebhardt, Christian; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2018): Konformationsbewegungen von aktiven Membrantransportern. In: BIOspektrum, Vol. 24, No. 5: pp. 495-497 [PDF, 447kB]

2017

Jazi, Atieh Aminian; Plötz, Evelyn; Arizki, Muhamad; Dhandayuthapani, Balasubramaniam; Waclawska, Izabela; Kramer, Reinhard; Ziegler, Christine; Cordes, Thorben (2017): Caging and Photoactivation in Single-Molecule Forster Resonance Energy Transfer Experiments. In: Biochemistry, Vol. 56, No. 14: pp. 2031-2041 [PDF, 3MB]

2016

Lerner, Eitan; Ploetz, Evelyn; Hohlbein, Johannes; Cordes, Thorben; Weiss, Shimon (2016): A Quantitative Theoretical Framework For Protein-Induced Fluorescence Enhancement-Forster-Type Resonance Energy Transfer (PIFE-FRET). In: Journal of Physical Chemistry B, Vol. 120, No. 26: pp. 6401-6410

Ploetz, Evelyn; Lerner, Eitan; Husada, Florence; Roelfs, Martin; Chung, SangYoon; Hohlbein, Johannes; Weiss, Shimon; Cordes, Thorben (2016): Förster resonance energy transfer and protein-induced fluorescence enhancement as synergetic multiscale molecular rulers. In: Scientific Reports, Vol. 6, 33257 [PDF, 2MB]

Robb, Nicole C.; Velthuis, Aartjan J. W. te; Wieneke, Ralph; Tampé, Robert; Cordes, Thorben ORCID: 0000-0002-8598-5499; Fodor, Ervin; Kapanidis, Achillefs N. (2016): Single-molecule FRET reveals the pre-initiation and initiation conformations of influenza virus promoter RNA. In: Nucleic acids research, Vol. 44, No. 21: pp. 10304-10315 [PDF, 4MB]

Velde, Jens van der; Oelerich, Jens; Huang, Jingyi; Smit, Jochem H.; Jazi, Atieh Aminian; Galiani, Silvia; Kolmakov, Kirill; Guoridis, Giorgos; Eggeling, Christian; Herrmann, Andreas; Roelfes, Gerard; Cordes, Thorben ORCID: 0000-0002-8598-5499 (2016): A simple and versatile design concept for fluorophore derivatives with intramolecular photostabilization. In: Nature communications, Vol. 7, 10144 [PDF, 1MB]

This list was generated on Thu Aug 11 07:33:17 2022 CEST.